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Hello,
I'm trying to basecall some reads I generated with squigulator.
`buttery-eel -i results/zymo-human/passed-1K.blow5 -o results/zymo-human/passed-1K-squigulator.fastq -x cuda:all -g resourc…
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Since @zaach is busy...
Can we get a team with many people who can review branches, merge requests, and publish new versions?
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Hey there,
First of all, congratulation on the exciting new release!
What is the expected runtime for `dorado correct`? I've got around 2 terabases worth of ultra long sequencing and I'm wonderi…
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# Issue Report
Unable to run dorado basecaller with CPU.
## Please describe the issue:
Despite attempting to use either the -x or --device flag in the dorado basecaller, dorado keeps throwing c10: …
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Hello,
Thanks for the wonderful tool!
It seems to run fine on many datasets, but for me it fails for one specific dataset, with the following error report:
```
Activating conda environment: …
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# Feature being added - Filtering!
Filter reads and alignments based on a flexible "mini language" specified in the TOML.
Would go into config TOML under the respective place for the filtering? I.e…
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### Prerequisites
- [X] I have written a descriptive issue title.
- [X] I have searched all issues/PRs to ensure it has not already been reported or fixed.
- [X] I have verified that I am using the l…
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- ToulligQC version 2.7
- Python 3.10.10
I have a few prom P2 flowcells, barcoded (`SQK-NBD114`, barcodes 1-4) basecalled with current `dorado 0.7.2`.
As I see from #27 -- the barcode issue has b…
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Dear developers,
The size of one dataset is about 80.0GB, and it's stored on a local disk (when running, GPU memory = 34.3/55.8 GB)
the following is the CPU and GPU info:
- CPU： 13th Gen Intel®…
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Hi there,
I am running into this error running readfish (2023.1.1) with Icarust ( native). I have tried so many different config but I cannot run readfish with icarust.
best,
Loïc