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### Description of the bug
Hi,
I am trying dev version and I encountered the following error:
I have 32 samples total, 4 conditions, 8 samples per condition
Best
```
Error executing proc…
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Hello SQANTI3 team,
I am trying to run SQANTI3 and use short read BAM files for ratio TSS. I have used the same list of BAM files (27 files) for other SQANTI3 runs with similar sized transcript gt…
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### Description of the bug
The pipeline fails when running with `--rmats` and the latest GTF file for human for Gencode: https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_43/gencode.v…
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Hello! Armin
I used the `Call_conversation` in `msa_pipeline`, but it errored me as below:
> Found Snakefile: workflow/Snakefile. Executing test analysis.
Config file config/config.yaml is extend…
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Dear all,
I generated txdb from Ensemble 110 and aligned my fastq files with human_Ensembl_110_hg38 like here:
txdb
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Hi everyone,
We are testing Readfish "Testing basecalling and mapping". It seems there may be a problem in communication between ReadFish and Guppy. This is the error we are getting:
[guppy/error] …
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I'm using the Snipgenie version installed from GitHub main repository on Dec 1, 2023
Here's my log:
```
The following options were supplied
time: 01/12/2023 13:25:26
-------
input : []
ma…
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Dear nd-LO developers,
I'm trying to align two local genome assemblies using nfLO, and get the following error at the bottom of the 'reports/execution_trace.txt'
file. Could you please help me fig…
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Dear,
We are using your tool on spiked samples and come across some discrepancies between what we expect and what we get. For example we used a bought RNA virus at 100% that should be B.1.1.7 (this…
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## **Describe the bug**
Hi,
Thanks to you, I've been using the chip-seq-pipeline2 workflow since last year until earlier this year which was very helpful.
However, a few days ago, when I ran …