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Dear Sir,
We are trying to install a version of AlphaFold2 on our HPC center where we have access to a large number of GPUs.
For Security reasons, there is no possibility to use Docker or S…
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使用作者提供的脚本和数据训练蛋白小分子复合体模型,发现内存随着epoch逐渐增加,最后超出机器上限,请问大家有没有一样的问题,是怎么解决的
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Hi all,
First of all thanks for all your work in DIA-NN, make our life much easier. I faced a problem with some Fasta files that I want to introduced to generate the libraries. My fasta files are pro…
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In this 06_Abundance.sh file, there is a file assigned to SAF(SAF=./06_Abundance/PIGC90_cds.fna.saf). Could you please explain where it is from and how it is generated? I only found PIGC90_cds.fna in …
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I get the following error by running antiSMASH using "funannotate remote" command.
from Bio.Align import _aligners
ImportError: cannot import name '_aligners' from 'Bio.Align'
my code:
modul…
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We have a fusion called SCP2-NTRK1 and we are curious as to why the fusion is being called as out of frame. The nt sequence as reported by arriba is as follows:
```
ATAATTTAGGCATTGGAGGAGCTGTGGTTGTAA…
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Hello,
I am annotating some vertebrate genomes using BRAKER3. I got quite good results on the first genome, but now with a related species' genome I am running into the troubles below. I am using pro…
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Hi @nadavbra,
Cool model, I just have a few questions. The first being, did you ever recover the GO annotation vector that was lost in https://github.com/nadavbra/protein_bert/issues/6? I can't se…
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![ldpred2_auto_chain_convergence](https://user-images.githubusercontent.com/128096956/231568818-6b8a0868-3fad-4374-8e2f-1dadd554e296.png)
Dear Author,
I have been using LDpred2-auto for my analyse…
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c_to_p fails for variant "NM_198180.2:c.408_410delGTG".
This is in-frame deletion that involves the termination codon, so I believe it is similar to issues #476, #449 and #525
![image](https://use…