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E.g. for breast, colorectal, and ovarian, add "mass spectrometry based proteomics data from CPTAC [citation]."
jjgao updated
3 years ago
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Hello!
SPLS-DA and PLS-DA models built on our data + possible known batch effect show the models can accurately classify samples based to one of two batches (pR2Y = 0.05 & pQ2 = 0.05 based on 20 ra…
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[TreeSummarizedExperiment](https://f1000research.com/articles/9-1246/v2) has emerged as an alternative to phyloseq in R/Bioconductor, using the new SummarizedExperiment container family. There are now…
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Large impacts of small methane fluxes on carbon isotope values of soil respiration https://www.sciencedirect.com/science/article/abs/pii/S0038071718302013
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Depletion of the paternal gut microbiome alters sperm small RNAs and impacts offspring physiology and behavior in mice – Bethany A. Masson – Brain, Behavior, and Immunity
https://www.sciencedirect.…
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Hi!
I am using inStrain in gut mouse microbiome samples. I compared nucleotide diversity and number of SNVs of every MAG and I observed that in most of the cases a decrease of π, more SNVs detecte…
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Diet at birth is critical for healthy growth, independent of effects on the gut microbiota – Lieke J. W. van den Elsen – Microbiome
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168…
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Thanks for making this great tool! I have a clarifying question I haven't been able to find an answer to. How does EMU handle novel species?
For example, I'm working with soil microbiomes that hav…
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This is because phinch throws an error on "metadata":null and locks up on the loading screen.
I'm not sure whether this is a mothur problem or a phinch problem, but here is a gnu solution that worked…
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Hi,
I am trying to apply tax_glom function on my phyloseq object. But looks like it is not working.
The dimensions of the file I am working on is 768 OTU and 201 samples
The code I used:
OT…