jbisanz qiime2R issues - Githubissues

jbisanz / qiime2R

Import qiime2 artifacts to R

MIT License

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qiime2R error in download, install? R v 4.4.1

#70 nathanfrazier35 closed 3 months ago
1
Support for reading ANCOM-BC results (#68)

#69 SergioAlias opened 4 months ago
0
Support for DataLoafPackageDirFmt format to import ANCOM-BC results QZA files

#68 SergioAlias opened 4 months ago
2
Update parse_taxonomy.R

#67 adossantos1 opened 5 months ago
0
update parse_taxonomy for new PR2v5 (April 2023) nine level taxonomy

#66 MDHDZ91 closed 5 months ago
0
Error when i call phyloseq object imported by qza_to_phyloseq

#65 pickyseok closed 5 months ago
0
Added support for TreeSummarizedExperiment

#64 antagomir closed 7 months ago
0
add: error message for case when metadata file doesn't exist

#63 jakubguzek closed 8 months ago
1
`Error in file(con, 'r") : cannot open the connection` when user inputs incorrect filename into metadata parameter in `qza_to_phyloseq``

#62 jakubguzek closed 8 months ago
1
OTU with sequence instead of unique identifier as row names?

#61 hank00000 closed 8 months ago
1
Support for TreeSummarizedExperiment container?

#60 antagomir closed 1 week ago
7
taxa_heatmap() sample order

#59 rms1u18 closed 3 months ago
0
Update parse_taxonomy.R

#58 bingli2019 opened 10 months ago
0
How to import nucleotide sequences [refseq() or DNAStringSet] using qiime2R

#57 lingvv opened 10 months ago
0
Phyloseq Object have 0 in OTU table

#56 lingvv closed 3 months ago
2
QZA to FASTA?

#55 hank00000 closed 10 months ago
1
Problem installing qiime2R in R 4.3.1

#54 Anaherasm closed 1 year ago
1
taxa_barplot and taxa_heatmap ordering x-axis by alphabetical order

#53 uemechebe closed 1 year ago
1
Unable to Install qiime2R

#52 sleverhart closed 9 months ago
3
Update parse_taxonomy.R

#51 jthmiller opened 1 year ago
1
error with installing qiime2R

#50 mjbug closed 3 months ago
4
summarize_taxa

#49 andrneves closed 1 year ago
1
close

#48 DheeerajMahale closed 2 years ago
1
taxa_barplot plots all taxa as remainder when a sample has 0 reads

#47 jthmiller opened 2 years ago
0
qiime2 to Phyloseq

#46 amrvx4 closed 2 years ago
1
Exporting R objects to qza files

#45 gregpoore opened 2 years ago
0
Newer version of dplyr no longer works with example

#44 nasiegel88 opened 2 years ago
1
Feature request: support for importing q2-longitudinal artifacts

#43 yanxianl opened 2 years ago
3
Error in read_yaml...could not find function "read_yaml"

#42 ungerdottir opened 2 years ago
0
taxa_barplot: Argument ntoplot > 10 changes the color pallete

#41 JoaoMiranda96 closed 2 years ago
1
Phyloseq object not recognizing negative control

#40 Avtober closed 2 years ago
2
Parentheses error importing tree with R version 4.1.1

#39 jrede opened 3 years ago
4
opening "remainder" on taxa_barplot

#38 figbeirns closed 2 years ago
2
Add check for valid barcodes in decode_golay

#37 cnoecker closed 3 years ago
0
Relative abundance (%) of common OTUs

#36 govind-sah closed 2 years ago
3
Issue Installing qiime2R on R4.0.4

#35 angepoch opened 3 years ago
1
Fix import to phyloseq

#34 akiledal closed 3 years ago
1
Error importing .qza files into R as a phyloseq object

#33 ekquaye opened 3 years ago
3
genus level average bar plot

#32 khemlalnirmalkar closed 3 years ago
2
tyring to subset phyloseq object - error sample data must have no zero dimensions

#31 Avtober closed 3 years ago
4
Reorder sample names on the taxa heatmap

#30 dinhe878 closed 3 years ago
1
Issues installing qiime2 R

#29 lautaro-rostoll closed 3 years ago
2
taxa_barplot: facet_grid returns NA

#28 marctormo closed 4 years ago
6
Getting an error while trying to creat a phyloseq object in R

#27 BioresearchBO closed 4 years ago
3
Use faster/multithread read functions

#26 akiledal closed 3 years ago
2
Failed to install qiime2R in R (4.0.1)

#25 Lin936 closed 4 years ago
3
problem with beta diversity

#24 pavlo888 closed 4 years ago
3
Issues with Taxonomy Parsing

#23 cedwardson4 closed 4 years ago
4
New error with read_qza for table.qza?

#22 SJohnsonMayo closed 4 years ago
4
Add taxonomy argument in example in README

#21 ropolomx closed 4 years ago
1