-
## Expected Behavior
No crash using ` --save-recycles` in colabfold 1.5
## Current Behavior
Crash with colabfold 1.5 when using ` --save-recycles` argument to colabfold_batch (in local
## Step…
-
Hi,
I have been trying to annotate my dataset, but it always stops at "Getting hits from pfam," and I get this error:
> Traceback (most recent call last):
File "/gxfs_home/geomar/smomw535/min…
-
Hi,
I tried to set up an mmseq2 server following the steps in https://github.com/sokrypton/ColabFold/tree/main/MsaServer
The server starts up as expected.
My colabfold commmand line: "`colabfold_…
-
Dear all:
I have a question: How can I do a bulk search sequences in the web version?
![image](https://user-images.githubusercontent.com/103171497/200107980-555ac02e-695b-4302-a040-b5f8971013ca.pn…
-
Hi,
Thanks for providing your code!
Can I ask what is the easiest way to generate the additional MSA input for clustering? I see that you guys mention in the paper you used the ColabFold imple…
-
Dear Team,
We are facing error with the dram database download issue and getting the traceback
```
File "/scratch/gencore/.eb/2.0/software/dram/1.3.5/bin/DRAM-setup.py", line 158, in
ar…
-
The MSA job pipeline built into this app has the following line in it :
EXPAND_PARAM="--expansion-mode 0 -e ${EXPAND_EVAL} --expand-filter-clusters ${FILTER} --max-seq-id 0.95"
...
"${MMSEQS}" ex…
-
## Expected Behavior
I'd like to search a similar structure to AF-D2QBA9-F1-model_v3 within the PDB database. However, not results were produced. Why nothing reported in the aln.m8 file? If this is b…
-
I am trying to replicate the commands that run in `worker.go` - specifically the `MsaJob` script that starts at: https://github.com/soedinglab/MMseqs2-App/blob/59f2761c2f215ed05e3c99879e97fa578f7c12cb…
-
## Expected Behavior
Should compile on linux without errors
## Current Behavior
Throws error about missing header file encoder_weights_3di.kerasify.h during make
## Steps to Reproduce (for bugs)
…