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In VMD, there is shortcut key (2) to change to click mode to display distance between two atoms.
hainm updated
5 years ago
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I'm trying to color each residue in a structure according to a list of colors. I am trying to replicate the demo in issue #492 . I copied and pasted the code, but the demo structure remains blue.
I…
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I'm following the instructions on the readme site:
```
pip install nglview
jupyter-nbextension enable nglview --py --sys-prefix
```
installation works fine:
```
jovyan@jupyter-karan:~$ …
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I put the files on eagle under the emma folder. Here is what you have:
orf.fna - entire metagnome assembly
proteins.prodigal.faa - translation of metagenome assembly
orfMG...fna - assemblies of ind…
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I'm using stage to create viewers dynamically, but eventually I get a console error (just testing in Firefox for now).
Error: WebGL warning: Exceeded 16 live WebGL contexts for this principal, losing…
ehb54 updated
6 years ago
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Hello,
At RCSB, they have a ligand viewer nowadays:
https://www.rcsb.org/3d-view/1OXR
then choose Ligand View and select AIN (aspirin).
They can detect all those interactions:
Hydrogen Bonds …
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I've contacted the developer of NGLess with this question, but it has been about a week and he hasn't responded so I'm hoping someone here can help!
I have managed to successfully assemble metagenome…
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The output of `thefuck --version` (something like `The Fuck 3.1 using Python 3.5.0`):
The Fuck 3.25 using Python 3.6.4
Your shell and its version (`bash`, `zsh`, *Windows PowerShell*, etc.):…
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I've recently missed having access to $TMPDIR or `--temporary-directory` as part of the script.
I couldn't find any way to access the environment or the command line arguments besides `ARGV`.
I'm …
unode updated
6 years ago