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**Defining Mutations:** `XBB.1.41` > `C18877T` > `T1657C, G3431T(ORF1a:V1056L), A22578G_reversion(S:G339R)`
**Query:** `T1657C, G3431T, C18877T`
**Earliest seq:** 2023-07-16 (`EPI_ISL_18314292`, Att…
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There seems to be a large branch of EG.5.1.3/XBB recombinant.
EG.5.1+C335T,T2334C(rev),C22570T,G27666T
Orf1a:R24C,V690A(rev)
Orf7a:E91D
XBB--EG.5.1.3
Breakpoint after 2335, depend on donor…
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Originally discussed in https://github.com/sars-cov-2-variants/lineage-proposals/issues/429#issuecomment-1676365856
XBB.2.3.3 recently acquired S:T478R as several siblings of it did before.
Defi…
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HK.3+G22103A,C4345T,T8870C(S:G181R)
GISAID query: G22103A,C4345T,T8870C
No. of seqs: 6(China 5 USA 1)
First: EPI_ISL_18213217, 2023-8-20, Fujian
Latest: EPI_ISL_18252150, 2023-8-31, North Dako…
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Defining mutations:
FY.5>C23277T (S:T572I)>T26921C>C5312A (ORF1a:L1683I)>A610T, G13313A(ORF1a:V4350I), C21057T, G22021T(S:M153I), T22119C (S:F186S), G22302A (S:S247N)
GISAID query: A610T, G13313A, G…
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Defining mutations: GW.5 then ORF3a:W149C(G25839T)+nuc:A28768G
https://nextstrain.org/fe…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/203
This lineage seemed deemd to dying off when in the new batch from South Australia uploaded there were 11 samples…
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XBB.1.16+S:L455F,F456L(G22927T,T22928C)
GISAID query: G22927T,T22928C, C11750T,T12730A,-T2Y,-T2A,-del686,-21812,-9991,-12038
No. of seqs: 5(Guangdong 1 Anhui 4)
EPI_ISL_18037229, EPI_ISL_181338…
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### **Description**
**Sub-lineage of:** XBB.1.17.1
**Earliest sequence:** 2023-8-21, France, Ile-de-France, Bobigny, — EPI_ISL_18221906, EPI_ISL_18221907
**Most recent sequence:** 2023-8-21, France…
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EG.5.1.1+C28292A(N:Q7K)+T22917G(S:L452R)
GISAID query: C28292A,T22917G,G13627A
No. of seqs: 8(Singapore 7(all local) China 1)
First: EPI_ISL_18146022, China, 2023-8-15
Latest: EPI_ISL_18243495…