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Firstly, thank you very much for attempting to simplify the workflow for those who are not computational biologists.
This is the specific excerpt that the title is referring to:
` python prepare…
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### Description of feature
Hi Jason,
This workflow looks great and I hope to try it out soon.
If you haven't already considered it, you might want to take a look at incorporating this tool as an a…
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toolshed.g2.bx.psu.edu/repos/iuc/miniprot/miniprot/0.13+galaxy0
Example job from Ross @fubar2 that fails at ORG but runs Ok at EU (same inputs/params/tool version). Seems to have similar default me…
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Hi!
Dolphyn is awesome! I found the github page via the publication!
I just wanted to ask what Python Version do you use for running Dolphyn?
I'm running python 3.12 and I get an error becaus…
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Could you also share an example of generation by secondary structure, that is shown in 4.3.3 CONTROLLABLE GENERATION: SECONDARY STRUCTURE GUIDED PROTEIN SAMPLING part of your state. Thank you in advan…
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If you try to predict, just examples/small_molecule/NSW_ideal.sdf for example, you get this error:
Traceback (most recent call last):
File "/home/tydingcw/git_repos/RoseTTAFold-All-Atom/rf2aa/ru…
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See line _1392_ as example,
`atom._coords = [ [ float(rec[5]), float(rec[6]), float(rec[7]) ] ]`
the `rec` here comes from line _1308_:
`rec = split(rec)`
Sometimes protein PDB file content looks…
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I'm running the scripts in their default state and get stuck at step 9 in notebook 01.get_reaction_kcat_using_AutoPACMEN.ipynb when running
get_reaction_kcat_mw(model,autopacmen_folder, project_name,…
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* **PTHR ID & PTN node:**
PANTHER:PTN004606439
UniProtKB:Q9P7H0
nhp2
part_of
GO:0022625 cytosolic large ribosomal subunit
ECO:0000318 IBA
GO_REF:0000033
MGI:MGI:1343877 more...
28481…
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For each of the following, do blobs change height and color as expected:
- [x] When the mutation button is checked with a SNP
- [x] After adjusting the hydropathy slider
- [x] After adjusting the…