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### The repo for this project lives [here.](https://github.com/open-austin/water-quality)
#### What problem are we trying to solve?
I saw this headline:
[City of Austin warns residents against …
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kraken-build --standard --db $DBNAME
Only build Bacteria and Viruses, plasmids and human are not downloaded.
Not sure this is a bug or standard feature.
kraken-build --download-library plasmids --db …
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GO:0042960 antimonite secondary active transmembrane transporter activity has a single annotation by EcoCyc to [P0AB93](https://www.uniprot.org/uniprot/P0AB93). It seems this term has the same meaning…
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Hi hi,
As discussed in the meeting, here are some issues identified while teaching the BMZ (please feel free to modify or add more things):
- Searching engine: it works well suggesting existing t…
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We have glosses repeated in PWN 3.0 and PWN 3.1.
- 376 cases in PWN30 where 289 gloses have been repeated twice.
- 363 cases in PWN31, where 275 sentences were repeated twice.
One example:…
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How do you handle place and time fields, mostly geography and spacial data fields, for captive bred individuals? Other than putting the "collecting source" as captive. In searching data on Arctos, dif…
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Hi all,
Thanks a lot for your efforts developing this tool.
I am using centrifuge for taxonomic profiling of metagenomes from various ecosystems and I am currently building databases for bacteria,…
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In many cases we should be able to detect the correct nomenclatural code by looking at the name and its kingdom.
The name parser already determines if a name clearly belongs to a certain code, e.g.…
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### Description of feature
Reported as being a good performer:
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-022-08803-2#Sec6
Available on bioconda:
https://bioconda.github.i…
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Hi, I am new to nanodisco and methylation profile analysis in general. I have come across the same issue multiple times while trying to perform methylation binning on a nanopore sequenced dataset comp…