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I am running:
`bismark_genome_preparation --path_to_aligner /my_path/bowtie2-2.5.0-mingw-x86_64/bowtie2-2.5.0-mingw-x86_64/ --verbose /my_path/RRBS/
`
And I get the following output just after …
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I read in your paper that Nanopolish performed the best among the 3 callers you tested. I have a few questions:
1. Nanopolish clusters neighboring CpGs when they are very close to each other. In th…
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Hi
**Shortcut to my problem**:
I need to find unique protospacers. I forged a R package with a newly released genome of A thaliana. Therefore is lacking TxDb object and I cannot visualize my best …
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hello
I am very interested in evaluating Venus for my data (scRNAseq data from persons with HIV)
I am trying to set up the venus conda env but I get the an error when running
```
conda create --n…
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Thanks for maintaining this suite of packages.
I just ran into a series of problems when using `addSpacerAlignments` with `bowtie` instead of `biostrings` as aligner.
Basically I'm working with bact…
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### Description of the bug
When a `bed` file is provided using the `-blacklist` parameter the pipeline stops throwing the exception below:
```
Invalid method invocation `pow` with arguments: 2 (jav…
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I am running the latest version of Cecret on paired-end fastqs as follows:
nextflow run UPHL-BioNGS/Cecret -profile singularity -c configs/sarscov.config --medcpus 70 --maxcpus 100 --reads reads --re…
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Hi, dear AAFTF team,
When I running command of AAFTF filter and AAFTF vecscreen, I stuck at trouble as following:
```
Traceback (most recent call last):
File "/home/liangdong/opt/anaconda3/b…
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Hi,
I've been trying to test the gRNA efficiency with your tool. However, I keep getting an error while trying to run the first code.
When I run this:
python CASowary_Preprocess.py Gene.csv -o…
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### Description of the bug
Possibly related to #238
```
error report (nextflow tower run tab):
Workflow execution completed unsuccessfully
Error executing process > 'NFCORE_SCRNASEQ:SCR…