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crisprVerse
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crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
MIT License
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addGeneAnnotation module can not annotate the genes on the minus strand
#35
fsnibs10
opened
1 month ago
2
Unexpected PAM truncation
#34
RussBainer
closed
1 month ago
2
`addEditedAlleles()` fails when the guide sequence is not editable
#33
RussBainer
closed
1 month ago
3
The makeTxDb*() functions have moved from GenomicFeatures to txdbmaker
#32
hpages
closed
3 months ago
1
Support guide efficiency prediction for DjCas13d [feature request]
#31
abearab
opened
5 months ago
1
Fixed issue with NA names in UTR GRanges
#30
ltHobbes
closed
5 months ago
0
AddOnTargetScores unable to run due to error with creating conda environment
#29
nicodemus88
opened
10 months ago
2
Design spacer for CRISPR-Csm transcript targeting systems [feature request]
#28
abearab
opened
11 months ago
2
Issue22
#27
ltHobbes
closed
11 months ago
0
Error building gene annotation object with GFF for CHM13v2.0
#26
nicodemus88
closed
5 months ago
3
Fixed issue with empty 5' GRanges
#25
ltHobbes
closed
11 months ago
0
error when constructing a tssObject using yeast gff file
#24
adrbmdns
closed
11 months ago
2
DNA and RNA bulge off target DSB
#23
frvcw
closed
11 months ago
1
GuideSet2DataFrames: improvements
#22
Jfortin1
opened
1 year ago
0
Increase barcode length for Levenshtein distance
#21
Jfortin1
closed
1 year ago
0
`addSpacerAlignments` fails to find off-targets with bowtie and custom genomes
#20
m-jahn
closed
1 year ago
5
Validating Existing gRNA Libraries - Error in Off-Target Characterization (addSpacerAlignment)
#19
stefanusbernard
closed
1 year ago
7
MIT/CFD scores when spacers are duplicated
#18
Jfortin1
opened
1 year ago
0
`max_mm` vs `n_mismatches`
#17
MatthewPace98
closed
1 year ago
2
`addSpacerAlignments` maximum `n_mismatches` query
#16
MatthewPace98
closed
1 year ago
1
CrisprVerse problem: export a guideSet in a file
#15
frvcw
closed
1 year ago
2
Change default to FALSE for standard_chr_only
#14
Jfortin1
closed
1 year ago
1
Issue10
#13
Jfortin1
closed
1 year ago
0
Alignments error while using `PairedGuideSet` object as input
#12
abearab
opened
1 year ago
2
`addSpacerAlignmentsIterative` – Error in `curl::curl_fetch_memory`
#11
abearab
closed
1 year ago
3
addSpacerAlignments Error in .new_IRanges_from_start_width(start, width) : 'start' or 'width' cannot contain NAs
#10
MatthewPace98
closed
1 year ago
6
what's the meaning of "alignments" in GuideSet object ?
#9
panxiaoguang
closed
1 year ago
2
Web UI crisprVerse designer
#8
tonyreina
closed
1 year ago
1
Removed crisprDesignData dependencies from addNtcs tests
#7
Jfortin1
closed
1 year ago
0
guideSetExampleFullAnnotation lacking exon_id in geneAnnotation.
#6
ltHobbes
closed
1 year ago
1
"downstreamATG" colname misspelled
#5
ltHobbes
closed
1 year ago
0
I don't konw why but the off-targets found by addSpacerAlignments was abosolutlely wrong?
#4
panxiaoguang
closed
1 year ago
1
onTargets for guideSet object always get nothing
#3
panxiaoguang
closed
1 year ago
0
The style specified by 'NCBI' does not have a compatible entry for the species Danio rerio
#2
panxiaoguang
closed
1 year ago
1
len arguments in spacers accessor function
#1
Jfortin1
opened
1 year ago
0