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question from kim
For evidence filtering, should the drop-down just have all possible evidence types (with those with no annotations greyed out)? Or should it just have the ones that are actually i…
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I have followed instructions on the following link on installation and usage of MSnBase.
http://bioconductor.org/packages/release/bioc/vignettes/MSnbase/inst/doc/MSnbase-demo.pdf.
This is the code…
ghost updated
7 years ago
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How should I enter the characteristics of a monoclonal antibody into PKSim v. 7.0?
The Compound screen requires information on log P, pKa and solubility - what is appropriate to enter for a mAb?
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ghost updated
7 years ago
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I wrote some code yesterday to output the number of sites on each protein where a given PTM occurs. I think adding that output to MetaMorpheus would be a fast, easy way for users to visualize the PTM …
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Hi Harald and Marc,
thanks for your continued efforts to improve SearchGui and PeptideShaker - they are both great tools and I love using them.
I have recently tried DIA-umpire to extract some p…
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Hejhej,
I have a question regarding current options in GalaxyP for **protein quantitation**, especially on **stable isotope labels** (e.g. SILAC). While there are a lot of good possibilities for pept…
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Hi,
As a new user of OpenMS/TOPP, I started with running the example pipelines. I encountered some problems with Ecoli_Identification.toppas workflow (see log below). Any ideas what's going wrong? One…
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Hi,
I have used a set of contigs (corresponding to a one specific bin) to assign taxonomy.
The report file could be misleading if your input data are contigs or bins...
I have attached a screensh…
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protein identification
under spectral analysis and under protein analysis
definition: identification of protein, for example from one or more peptide identifications by tandem mass spectrometry.
sy…
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**Background**: The [CPTAC consotium](http://proteomics.cancer.gov/programs/cptacnetwork) has generated mass-spec proteomics data for [TCGA](tcga-data.nci.nih.gov) samples. cBioPortal supports integra…
jjgao updated
8 years ago