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XBB.1.5.70+C13405T,
C23280T(S:T573I),C23673T(S:S704L), A24373C,G25045A(rev),A25359G(S:K1266R),A26708G, T27059C(rev),T28005C(Orf8:38 rev),T28297C(Orf9b:I5T),A28447G(Orf9b:N55S), T29386C
C23280T,C23…
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**Description**
**Sub-lineage of:** HK.13.1 (EG.5.1.1.13.1—has FLip)
**Earliest sequence:** 2023-10-13
**Most recent sequence:** 2023-10-13
**Continents circulating:** Europe (4)
**Countries circ…
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DV.7.1+A28676G(N:T135A)+G22021T(S:M153I)
GISAID query: A28676G,G22021T
No. of seqs: 9(Spain 5 UK 1 Singapore 1 Portugal 1 Italy 1)
First:EPI_ISL_18168253, Spain, 2023-8-7
Latest: EPI_ISL_18373…
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Parent: EG.5.1*( and sometimes its first descendents as EG.5.1.1* or else)
Gisaid Inquiry : **-C5835T,-G22927T,C22033A,G21718T,C22480T** (The latter two indicates EG.5.1*, C22033A for F157L, and th…
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_Taken from **Branch 2** of Multitask sars-cov-2-variants/lineage-proposals#1048 , Sub-branch of sars-cov-2-variants/lineage-proposals#905 proposed by @aviczhl2_
**Defining Mutations:** `EG.5.1.1` …
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FE.1.1+C3261T(Orf1a:T999I),T3577G,C15180T+T9445C+C28057T(orf8:A55V)+G23426A(S:V622L)
GISAID query: G23426A,C28057T,T9445C
No of seqs: 52( Puerto Rico 18 Canada 30 USA-FL 1 USA-OH 2 USA-TX 1)
Firs…
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Transferred from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1180
Defining mutations:
JN.1.4 [Orf1a:T170I (C774T)] > T18453C > S:N185D (A22115G)
Query:C774T,T18453C,A22115G…
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@FedeGueli @AngieHinrichs
I find this problem especially severe in EG.5.1.1.
For example, there is an EG.5.1.1+C27059T+S:L455F branch with 6 seqs, however if you look at seqs it shows and verify…
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GK.1+A1982G(Orf1a:I573V)+T8167C+C12651T, C28087T, C28567T(Orf1a:T4129I,Orf8:A65V, Orf9b:T95M)
GISAID query: C12651T, C28087T, C28567T
No. of seqs: 43(Brazil 27 USA 16)
First:EPI_ISL_18125506, B…
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This is **Branch 1** of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097
S:T572I is highly homoplasic in JN.1 as we saw in XBB.1.22.1 descendants and as shown by Dadonaite and B…