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# AllClo
### Unification, harmonizations and validations of high fidelity MoClo genetic assembly standard expansions
Our objective is to create a standard expansion unifying all the previous ones …
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I noticed you've been adding a bunch of info on character sets, and I think it's worth mentioning how the *National Replacement Character Sets* (NRCs) work, because that's something that I think is no…
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**User story**
As R&D we need an MVP way to create the 24 x 384-well tag plate variants required for a month's set of work on the Bioscan project.
**Who are the primary contacts for this story**
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Hello,
I'm calling variants using a cactus generated graph genome, generated and indexed as previously reported in another issue (#2362). Alignments and post processing is described in the issue #254…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1601
**Description**
**Sub-lineage of:** LB.1.3 (S:∆S31, Q183H, R346T, F456L)
**Earliest sequence:** 2024-4-29, Fra…
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Hi,
I was wondering if stragler is able to deal with repeat interruption.
For some diseases we can see interruptions of the repeats. Like for Huntington, where the normal repeat CAGCAGCAG... can …
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**Background**
Sometimes users need to register oligonucleotides containing randomized or "mixed" bases. It means that on the defined position a variant monomer could occur.
Variant monomer is a mon…
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* input: [input.txt](https://github.com/genome-nexus/annotation-tools/files/5859860/input.txt)
* Intermediate files: `annotation-tools` intermediate files I must add the .txt at the end or github …
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I have heard great things about CHORD and I'm really excited to try it. So far the installation works and I can run it, but the results do not match my expectations. For example, I am attaching the re…