-
```
Hi,
I have been using using the gt2bed perl script for conversion. Recently I came
across this.
I downloaded gtf file (refflat hg19) from ucsc table browser. When I convert
this gtf to bed, I…
-
Hello,
I am trying to run star this is my command:
#!/bin/bash
#PBS -q huchond
#PBS -o out_StarIndex
#PBS -e err_StarIndex
#PBS -l select=1:ncpus=150
#PBS -r y
module load STAR-2.7/STAR-2.…
-
Hi folks,
I hope this finds you well. I hope I am blind or misunderstood the bindings version for node.js. I can get a decode example working but not for encoding. Here are the respective decoding an…
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encounter an error when creating annotator from 10x gtf file.
Modifying the get_exon_number function works for me.
```
def get_exon_number(row):
if "exon_number" in row["attribute"]:
# …
-
Hi there,
I've been using isoCirc successfully for a while now but this week after installing v1.0.6, it seems to be generating some errors towards the end of the process. I am able to get isocirc.…
-
I'm finding a strange behavior in `gtfs2gps()`. In the reprex below, I filter a single trip and convert it to a GPS-like table. The problem is that the `gtfs2gps()` function prints a message saying `'…
-
Hello,
Thanks for this very useful package!
I just have a few questions after runnning on single-cell ATAC-Seq libraries generated from the 10X multiome kit. I ran using the following commands:
…
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Support indexing of plain text gtf files.
It would be helpful to have the ability to index plain text gtf files for text searching. It would involve integrating the [gmod/gtf parser](https://www.n…
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Hey everyone - this issue is on processing fares for transfers between different agencies. For example: riders with ticket A on agency#1 can transfer for free to agency#2. This is based on [this propo…
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As part of an ongoing conversation between stakeholders, the GTFS Quality Reports that are generated monthly and emailed out to clients will benefit from a restructuring.
## Question:
How can we im…