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Hey,
I ran BiG-SCAPE with four different cutoffs (0.3, 0.5, 0.75 and 0.9), whereby the interactive networks from the html file are identical to the network files loaded in Cytoscape for cutoffs 0.3…
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_From @fedarko on March 18, 2017 3:6_
We can uncollapse them as the user zooms in on selected clusters (see #53).
_Copied from original issue: fedarko/MetagenomeScope#167_
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Perhaps find a way to super-impose MS2LDA and Molecular Networking output together?
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### Problem
Currently, [widget.ts#L278](https://github.com/cytoscape/ipycytoscape/blob/master/src/widget.ts#L278) has `trigger: "manual"`
### Proposed Solution
Change it to `trigger…
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When I select Locate Terms and then Cellular Process, the screen clears and never displays an ontology. If the ontology does display, it flashes and then disappears.
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**Is your feature request related to a problem? Please describe.**
Including additional tools in MMEDS should be simply a matter of defining inputs, outputs, and command calls. It is unclear whether …
cleme updated
3 months ago
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refresh automatically when the underlying NGAC graph is changed.
dyiop updated
2 years ago
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**Describe the bug**
_A clear and concise description of what the bug is._
Using the GSE129943_rsem_counts_2016 example file, but formatted like the UI says doesn't work.
**To Reproduce**
Step…
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Following the example suggested in ??mEQO::Microbiome,
the CAN_plot() function seems not to be available in the mEQO package. In fact there is no such function in the package. But I could not find th…
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The ability to save a GPML file was previously available, but now is gone.