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Hi,
I am running into an error with `funannotate update`, trying to add UTRs to existing CDS annotations. It looks like it is an issue with `Kallisto` finding duplicate fasta header names in `update…
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Hello,
I am trying to do the alignment pipeline from fastq files that I got for whole exome sequence.
I first used trim_galore to remove adapaters and I got .fq files.
Then I downloaded the human…
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I am attempting to convert my fasta files to fastq using the command:
seq -F contig.2.fasta > contig.2.fq
but I keep getting:
seq: invalid option -- F
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Hi Norgal Team,
I am trying to run Norgal with forward and reverse fastq files, but I either get the following failure message or the program just keeps running indefinitely without update:
`$ p…
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I have mapped reads with the following commands:
1) bowtie --phred33-quals -q -n 2 -l 10 --best --strata -y -S -k 1 -m 1 --al aligned.fastq -un unaligned.fastq Reference Query.fq > Mapping.sam
…
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```
What steps will reproduce the problem?
1. in the sample TableDemo.java the table feed url is
baseUrl/feeds/spreadsheetKey
2. the FeedURLFactory getTableFeedUrl() function, when passed the same
spr…
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Hi Trinity team!
I have a dataset of 168 paired-end fastq files (84 samples) of a total of 428 GB. I'm running Trinity on a server of 64 CPUs, 680 GB of RAM, and 1800 GB of disk space.
```
Tri…
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Greetings,
When I run the following command:
`python ./VaST-master/VaST/preprocessing.py test /media/bjarne/SSD1/Taro_Flashdrive/ /media/bjarne/SSD1/Taro_Flashdrive/Taro1.fq_var_SiteMatrix.txt -…
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Hello,
I tried to run STAR_Fusion.
Alignment with STAR seems well running,
But there's an error while calling fusion.
I checked the file "Pipeliner.pm" but it doesn't work well.
The mem…
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Naive readers of a rrul plot tend to look at the average, when, especially when you are trying to describe the difference between a good plot of latency and jitter
[a good sch_fq plot of latency a…
dtaht updated
3 years ago