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Thanks for your great work!
I am doing some research on 3D MRI data, and I construct 3D CNN model with RNN model as well. I want to visualize the hidden layer of the 3D CNN model and the RNN layer. I…
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Hello,
Is it possible to view methylation-tagged BAM files in igv-reports? I can view the haplotagged bam files via using the "HP" tag, but unclear if BAM CpG coloring is possible as well.
If …
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Hi, I used bam2cgmap command. But I got an error below:
Traceback (most recent call last):
File "/data1/program/cgmaptools/cgmaptools", line 115, in
subprocess.call([DIR + "/bin/CGmapFrom…
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The program `dmrs` calls DMR from table of adjusted pvalue. However the output is mixed with DMRs in both directions, e.g. dmr:(some positive value) and dmr:(some negative value), and user has to manu…
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1. A request:
Is there any way that the error. files could be e-mailed to us
2: http://snapshot.geneontology.org/reports/gorule-report.html
I this file there are a bunch or rows about pre…
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Hi,
I'm trying to use `cgmaptools mtr` to call methylation in multiple regions, but I get the following error:
```
cgmaptools mtr -i sample.CGmap.gz -r regions.bed
Traceback (most recent call…
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```
What steps will reproduce the problem?
1.Run python methratio.py *.BSP > test.BSP
2.
3.
What is the expected output? What do you see instead?
This script should generate output of summarized met…
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hi
I used bs3 and every things goes well as follow. But at the end sam file is empty. I found out some other people faced to the same problem. I think that the main code has some problem. Let me kno…
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### Ask away!
Hi! Quick question on extracting methylation data from aligned reads. Our raw bams have been methylation called already, so it seems like the easiest way to extract methylation informat…
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Hi Matthew,
I installed your package and i using your data fro the tutorial, same seed and following line by line
However, when i arrive to that particular line
sites.ret