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I am very grateful to you for developing this excellent software. I want to know how the function of eliminating false positive non viral components (bacteria and fungi) in the software is implemented…
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### Description of feature
Create a sub-workflow of Plasmid prediction using the following modules from nf-core
- [x] [MOB-Suite](https://github.com/nf-core/modules/tree/master/modules/nf-core/mob…
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Hello,
I am trying to run rgi on a set of metagenomic samples. The command I run is
`rgi main --input_sequence SAMPLE.fasta --output_file testing --local --clean --low-quality`
However, anyti…
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Error while downloading the DB. (Step 3 Download the reference database using ```PLASMe_db.py```)
Environment:
CentOS Linux release 8.5.2111
Linux version 4.18.0
Conda version 23.9.0
Mamba vers…
ASUQ updated
6 months ago
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Is there a set of documentation for Remora to get us started? We have a set of data ready but are having trouble getting started. We are interested in damaged base sequencing. Also, are the oligo sequ…
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They're a bunch of warnings for `Datatype class not found for extension`
```
root@sn06:~$ journalctl -u galaxy-zergling@0 --since "24 hours ago" --no-pager | grep -i "Datatype class not found" | …
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You can involve some machinery in that to make it not so easy:
To give Player1 genes to Player2:
- Take blood sample of Player1
- Purify blood sample of Player1
- Take blood sample of Player2
- P…
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### Is your feature related to a problem?
I've found the current assembly strategy "_Downsampling --> Subsampling --> Flye x3 --> Deconcatenation --> Reconciliation --> Polishing_" is struggling at d…
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Hi,
I am curious to know if it possible to plot chromosomes with no syntenic regions in the riparian plot.
As I understand, the reference genome is the only one to have all of its chromosomes disp…
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"Assembly components with same marker as construct" in Sequencing doesn't properly handle constructs that have multiple antibiotic resistance markers. Instead, they are just not listed. This could be …