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I am running HybPiper using a reference that has 17879 genes. I'm testing the pipeline on one sample before going for more. First, I got the following BiopythonWarning which I am not sure how crucial …
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While using v3 (master.clades.nextstrain.org) I suddenly got the following error:
```
Error message: Error: The target 'stop-codons-label___index_1849__seqName_hCoV-19-USA-CA-HLX-STM-HVGZFYFHC-2023-…
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RustPython is relatively mature now.
https://github.com/RustPython/RustPython
Please add it to the install list.
It is easy to build.
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**Dear Anamaria**
I wanted to ask you how the CAI is calculated by coRdon because I'm getting different values with other programs using the same reference set. Additionally I'm getting values greate…
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Hi Daniel,
We noticed an inconsistency between the Fusion_sequence and the protein sequence.
It is a fusion between HEG1 and SLC12A8, and the reported fusion sequence is
```
TCGGGATACTTTCAGTTCA…
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Some inspiration from Genome Browser:
![f1 large](https://cloud.githubusercontent.com/assets/7809/10230476/3820522e-684b-11e5-93a2-c29f31225765.jpg)
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Ive noticed that MAFFT is generating alignments with sequences in both forward and reverse orientation. Is it possible to add the MAFFT --adjustdirection flag to the pipeline?
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basvb updated
6 years ago
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Hi,
I was trying to setup the database.
But it breaks upon the execution of this code:
`mmseqs createindex colabfold_envdb_202108_db tmp2 --remove-tmp-files 1
`
The error message I get is …