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# General Information
## Please paste a link to the paper or a citation here:
Title: A Survey on Applications of Artificial Intelligence in Fighting Against COVID-19
Link: https://arxiv.org/abs/2…
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Hi,
I would like to use epitopepredict for my predictions. Tepitope and mhcflurry work, but netMHCpan does not. I use the same test.config file for all of the mentioned predictors. However, netMHCp…
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**Are you using the latest release?**
Using newest version to my knowledge
**Describe the bug**
When running 'funannotate annotate' "Parsing InterProScan5 XML file" returns as error "ValueError: …
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## Issue Description
We are encountering significant challenges in managing files generated by ColabFold. The current naming convention does not seem to be compatible with AFM-LIS code.
## Curre…
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Title: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
## Please paste a link to the paper or a citation here:
Link: https://arxiv.org/abs/2004.07229
##…
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Hi,
I ran HiSat2, MarkDuplicate, removed reads with the lower quality score than 40 and finally only kept properly paired reads. Scallop/StringTie and TransDecoder could predict UTRs but unfortunatel…
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Hi, Thanks for your nice pipeline!
ViWrap 1.2.1 is encountering an error while running the command
```
./ViWrap/ViWrap run --input_metagenome /P/release/C/1-5_assembly/final_assembly.fasta --inpu…
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/NeuralPLexer/neuralplexer/inference.py:629: UserWarning: Assuming the provided receptor input is a protein sequence
warnings.warn("Assuming the provided receptor input is a protein sequence")
Blo…
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Per issue #172, there is a request to restore the computationally predicted compound-to-protein edges (from ChEMBL) in RTX-KG2, that got dropped in KG2.6.0 when we deprecated all the old API-based RTX…