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Thank you for the great package. I have a problem when one contrast doesn't exist for one cell-type (assay). This leads to the below error. I understand that no result can be reported for those cell t…
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Hi
This is a weird problem.
I've installed MOFA and I'm trying to work through the CLL example but can't execute the `runMOFA(MOFAObject)` command.
I keep getting this error:
```
x session…
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Hi,
I'm trying to run the Transcription factor activity inference from scRNA-seq on my dataset.
When trying to get the network with:
`net # A tibble: 43,178 × 3
#> source target mor
#>…
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Hi Seurat Team,
Great work with this new version! I think this will really be a huge leap forward!
Trying to work with Seurat 5 - is SCTransform suppoerted?
I've created a new Seurat object and…
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I have installed the Seurat 5 beta and it's all working well for me bar the FastNMM part.
I have the exactly same problem with the vignette code (so not giving an example of my own here). The issu…
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Hi Jeffrey and Ryan,
I was testing the multiome pipeline following the tutorial below.
https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Multiome.html
However, I found out that at the impor…
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This doesn't work as described in the Module customization tutorial. Something seems to be broken with `ResetModuleNames`. I've tried it with multiple `seurat objects` from different `hdWGCNA` runs.
…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/waldronlab/TENxIO
Confirm the following by editin…
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Hi @grimbough,
I'm trying to install rhdf5 (SingleCellExperiment really), but I encounter the following error when trying to install from BioConductor:
[removed image as it contains personal paths…
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I am using the R package "sleuth", which in turns uses the "rhdf5" package. I am getting an error when using the first command in the analysis:
reading in kallisto results
dropping unused factor l…