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The output of rmats=4.1.0 with only header, pls check, thank you.
rmats.py --b1 b1.txt --b2 b2.txt --gtf ./gene.gtf --od ../rmats --tmp ./tmp
wc -l ../rmats/*
```
1 A3SS.MATS.JCEC.txt
1 A…
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Dear Eduardo,
SUPPA2 is able to quantify and report alternative last (AL) exon events, which is good, since the last exons are always the target of several factors such as miRNAs and regulators of …
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Hi,
I have a quick question. Can I use rMATs without having two conditions ? I have large panel of samples and I am interested to calculate PSIs across samples. This could be used for QTL analysis …
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**Which chart**:
bitnami/airflow
**Is your feature request related to a problem? Please describe.**
There isn't urgently a clear migration path from stable/airflow to another well maintained airflow…
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STAR: 2.7.2b
STAR-Fusion: v1.8.1
Species: Populus euphratica
---
I have installed all the perl-dependent packages, but I still can't build ctat-genome-lib, so that when running STAR, I am prompt…
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### Describe the bug
Hello, I had configured `gh` cli on my laptop and then wanted to use it on a headless system. I copied the configuration over with `scp`:
```
(base)
Sat 4 Jul - 13:12 …
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Hi,
I am very interested to run jcast on few of my alternatively spliced transcripts, especially step 2 of the publication. I already have differentially used junctions, not from rMATS but from lea…
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I'm not sure if this classifies as a bug or not I just noticed that the transformation of targets removes argument from code. The example below shows that both `recursive=F` and `use.names=F` get remo…
bart1 updated
4 years ago
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Dear Authors,
First of all, many thanks for developing this great tool. I work with fission yeast and I have KO samples in which extensive intron retention expected. I used IRFinder on polyA mRNA-s…
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```
What steps will reproduce the problem?
1. Open AltAnalyze and begin
2. Click on Add New Species
3. receive error and program crashes
What is the expected output? What do you see instead?
Wha…