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Hello,
Many thanks for your wonderful tool. I was wondering if the metadata.tsv groupings was automatically generated by hero or if it is externally generated. If not, do you have any guidance on h…
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### Description of the bug
only few part of the pipeline were run
### Command used and terminal output
```console
$ nextflow run nf-core/rnaseq --input samplesheet.csv --outdir results --igenomes_i…
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Hi,
I do not know the mean of follows message ...
Do you know what happened?
base) [t-goto@gwB1 ~]$ HiCUP-0.8.3/hicup --config HiCUP-0.8.3/config_files/hicup_example.conf
Starting HiCUP pipelin…
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Hi there,
Thank you so much for creating this amazing tool!
I am just getting this error when running sqanti3_qc.py:
`Unable to import BCBio! Please make sure bcbiogff is installed.`
Howe…
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**Description**
Hello @rpetit3 ,
We are currently using the `shigeifinder` wf in the bactopia tools, but it stucks for many hours. Please find the logs below.
> (base) gilmansiu3@gilmansiu3-Z49…
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## Description of the bug
In the DSL2 branch, when using the `--methylkit` parameter in conjunction with methyldactyl the pipeline fails. This appears to be due to an 'either or' kind of behavior w…
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### Description of the bug
I was running a workflow on snRNA-seq data with STARsolo as the aligner and the human reference genome (Gencode v42) as the index. It seems that the second pass of the alig…
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Hi Jeremiah,
I ran SvABA on my 10X data, aligned using their barcode-aware aligner.
I know SvABA is meant for standard WGS but it managed to pull out the barcode tags which support the SVs.
M…
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### Description of the bug
Hello,
I've successfully finished running scrnaeq with `--aligner star` on single AWS instance but couldn't find the count results (i.e. barcode.tsv, features.tsv and ma…
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**Describe the bug**
Hi, I have used the scATAC-seq pipeline with sci-ATAC-seq input data. Although the run was indicated to be successful, the final bam file is missing cell barcodes and we think th…