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Not sure if this error is helpful! So please give me some direction on what I need to post!
[M::ha_opt_update_cov] updated max_n_chain to 100
hifiasm: inter.cpp:16098: void gen_trans_base_count_co…
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Hi,
Thanks for you nice hifiasm!
I have assembled two haplotypes using HiFi and Hi-C reads. Now I will scaffolded the two haplotypes using Hi-C data. Do I need to divide the raw Hi-C reads to two ha…
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Hello, I recently performed a de novo genome assembly using HiFiasm.
And I have Hifi sequencing data.
First, thank you let us use this wonderful tool.
But when i run for the first time,
I got lo…
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**Describe the bug**
PortAudio does not detect a DAC directly connected to I2S (HiFiBerry DAC2 HD) when running Raspberry Pi OS in 64bit mode. It shows following error message:
> Expression 'GetEx…
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Hi There,
I used the HiFi reads (~20x) to assemble a genome of an animal species. The output assembly is of high quality with N50 of 30 Mb. However, the genome size (2.6 G) is a bit larger than what …
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Hello,
I'm very new to STAR and linux in general. In order to use Braker for gene annotation, I am trying to receive a spliced alignment using STAR. (I have PacBio data).
This is my command:
**modu…
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Hi,
I am assembling a small genome (< 500Mb) with aprox. 180x Hifi read data.
Here is the command used:
`hifiasm -o results -t 60 -l0 reads.fastq.gz`
I am running it with 80 cores and 1Tb of…
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Dmesg:
"hifimems_soundcard: loading out-of-tree module taints kernel."
"snd-hifimems-soundcard soc:sound: ASoC: CODEC DAI hifimems-hifi not registered - will retry"
"snd-hifimems-soundcard soc:so…
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Hi
PacBio data is saved in BAM format and not in FastQ.
Is BAM supported and if not could it please be considered.
Converting 100's of GB BAM files to FastQ takes time and space and running directl…
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Hi there!
I've been battling with an issue that I'm sure it has already been addressed at some point in other posts on this page. However I would like to understand why my analyses are failing the …