-
Hello
I have run the command to convert fasta sequences to TFRecord as instructed. Here's my command
./tfrec_train_kmer.sh -i SRR1777715.fasta -v tokens_merged_12mers.txt -o SRR1777715.tfrec -s 2048…
mrumi updated
3 years ago
-
@abremges wo finde ich die software von der du gesprochen hast? Hat aber denke ich nicht oberstre prioritaet...
Hintergund: die software von gregor gibt keine informationen ueber die k-mer sequenz au…
-
Hi
It is great to hear the support for long-reads coming to kallisto I would like to introduce it to our pipelines
I have few question regarding running lr-kallisto on ONT dorado basecalled rea…
-
Hey @barche
I have a class wrapped:
```c++
mod.add_type("SequenceGraph")
.constructor()
.method("load_from_gfa", &SequenceGraph::load_from_gfa)
```
The class has …
-
## Expected Behavior
createdb creates a database with no error
## Current Behavior
createdb stalls and stops reporting once 10962815327 sequences have been added and fails to make progress. I…
-
It would be interesting and useful to extract k-mers when reading assembly sequences (FASTA), and perform some simple dimensionality reduction (such as PCA) afterwards to build a meaningful scatter pl…
-
Dear GIAB team,
while doing some k-mer counting using the files indexed at [sequence.index.NA12878_Illumina300X_wgs_09252015](https://github.com/genome-in-a-bottle/giab_data_indexes/blob/master/NA128…
-
As instructed in #0 of the README in example, I used the commands make clean and make MAXK=31 NUM_COLS=1 cortex_var.
I received the error:
collect2: ld returned 1 exit status
make: *** [cortex_…
-
Hi,
I meet error during ues easy353, as following. I do not know why, can you provide me with solution? Thank you so much！
Process Process-3:
Traceback (most recent call last):
File "/data/…
-
I noticed that the below check forces users to keep their retrained reference datasets in INSTALLATION_DIR/PhiSpyModules/data directory
https://github.com/linsalrob/PhiSpy/blob/540fbf2548cd6580a6fd9…