iqbal-lab cortex issues

iqbal-lab / cortex

reference free variant assembly

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issues

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Bug in arg-parsing for Joint workflow with no reference (ref Absent)

#32 iqbal-lab closed 1 year ago
1
make: *** [Makefile:29: src/alignment_cmdline.o] Error 1

#31 kdyoung100 opened 2 years ago
0
Fix makefile for arm

#30 martinghunt closed 2 years ago
0
run_calls.pl line 2137 error

#29 Srividhya-Sainath closed 2 years ago
5
Bump up seq_file dependency

#28 bricoletc opened 3 years ago
0
Replace stampy with minimap2

#27 bricoletc closed 3 years ago
3
System-wide htslib can fail linkage

#26 bricoletc opened 4 years ago
1
Cortex not outputting empty VCF when genotyped calls file is empty

#25 iqbal-lab opened 4 years ago
0
Possible precedence issue with control flow operator

#24 iqbal-lab opened 4 years ago
0
zlib.h: No such file or directory

#23 ShawnCone closed 5 years ago
4
make MAXK=31 NUM_COLS=1 cortex_var

#22 EmilyWesel opened 6 years ago
5
Please tag a release. Pretty please?

#21 tseemann closed 5 years ago
3
simpler/safer install.sh file

#20 tseemann closed 4 years ago
5
improve front page documentation

#19 tseemann closed 4 years ago
2
fix: use of inline keyword is different beyond gnu11; removed inline …

#18 ffranr closed 6 years ago
1
Running the run_calls wrapper with different numbers of samples produces different SNPs

#17 bioinfo11 opened 6 years ago
1
run_call.pl error

#16 bioinfo11 closed 7 years ago
2
In function `print_usage': nw_cmdline.c undefined reference to `string_buff_strlen'

#15 tseemann opened 8 years ago
5
wrong ref allele given in vcf of calls

#14 rmcolq opened 8 years ago
0
Bundled htslib won't compile - vcfcheck.c:358: undefined reference to `gt_type'

#13 tseemann closed 7 years ago
6
run_indep_wkflow_with_gnu_par hangs after parallel build step before combine

#12 rmcolq opened 8 years ago
7
Fix known bugs in genotyping and look at confidence distribution

#11 iqbal-lab opened 8 years ago
6
Remove GSL dependency

#10 iqbal-lab closed 8 years ago
1
missing / / in run_indep_wkflow_with_gnu_par.pl

#9 hcdenbakker opened 8 years ago
0
run_indep_wkflow_with_gnu_par.pl

#8 hcdenbakker closed 8 years ago
0
problem with run_indep_wkflow_with_gnu_par.pl

#7 hcdenbakker opened 8 years ago
8
New pipeline has a script which assumes k=31!!

#6 iqbal-lab closed 8 years ago
1
Improve mem height/width estimation in run_indep_workflow...

#5 iqbal-lab opened 8 years ago
4
Test Bandage once GFA support added

#4 iqbal-lab closed 8 years ago
1
Add GFA support

#3 iqbal-lab closed 8 years ago
5
Remove MAKE gsl docs

#2 Phelimb closed 9 years ago
0
Modify run-calls to delete working files at the end

#1 iqbal-lab opened 9 years ago
0