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iqbal-lab
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cortex
reference free variant assembly
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Bug in arg-parsing for Joint workflow with no reference (ref Absent)
#32
iqbal-lab
closed
1 year ago
1
make: *** [Makefile:29: src/alignment_cmdline.o] Error 1
#31
kdyoung100
opened
2 years ago
0
Fix makefile for arm
#30
martinghunt
closed
2 years ago
0
run_calls.pl line 2137 error
#29
Srividhya-Sainath
closed
2 years ago
5
Bump up seq_file dependency
#28
bricoletc
opened
3 years ago
0
Replace stampy with minimap2
#27
bricoletc
closed
3 years ago
3
System-wide htslib can fail linkage
#26
bricoletc
opened
4 years ago
1
Cortex not outputting empty VCF when genotyped calls file is empty
#25
iqbal-lab
opened
4 years ago
0
Possible precedence issue with control flow operator
#24
iqbal-lab
opened
4 years ago
0
zlib.h: No such file or directory
#23
ShawnCone
closed
5 years ago
4
make MAXK=31 NUM_COLS=1 cortex_var
#22
EmilyWesel
opened
6 years ago
5
Please tag a release. Pretty please?
#21
tseemann
closed
5 years ago
3
simpler/safer install.sh file
#20
tseemann
closed
4 years ago
5
improve front page documentation
#19
tseemann
closed
4 years ago
2
fix: use of inline keyword is different beyond gnu11; removed inline …
#18
ffranr
closed
6 years ago
1
Running the run_calls wrapper with different numbers of samples produces different SNPs
#17
bioinfo11
opened
6 years ago
1
run_call.pl error
#16
bioinfo11
closed
7 years ago
2
In function `print_usage': nw_cmdline.c undefined reference to `string_buff_strlen'
#15
tseemann
opened
8 years ago
5
wrong ref allele given in vcf of calls
#14
rmcolq
opened
8 years ago
0
Bundled htslib won't compile - vcfcheck.c:358: undefined reference to `gt_type'
#13
tseemann
closed
7 years ago
6
run_indep_wkflow_with_gnu_par hangs after parallel build step before combine
#12
rmcolq
opened
8 years ago
7
Fix known bugs in genotyping and look at confidence distribution
#11
iqbal-lab
opened
8 years ago
6
Remove GSL dependency
#10
iqbal-lab
closed
8 years ago
1
missing / / in run_indep_wkflow_with_gnu_par.pl
#9
hcdenbakker
opened
8 years ago
0
run_indep_wkflow_with_gnu_par.pl
#8
hcdenbakker
closed
8 years ago
0
problem with run_indep_wkflow_with_gnu_par.pl
#7
hcdenbakker
opened
8 years ago
8
New pipeline has a script which assumes k=31!!
#6
iqbal-lab
closed
8 years ago
1
Improve mem height/width estimation in run_indep_workflow...
#5
iqbal-lab
opened
8 years ago
4
Test Bandage once GFA support added
#4
iqbal-lab
closed
8 years ago
1
Add GFA support
#3
iqbal-lab
closed
8 years ago
5
Remove MAKE gsl docs
#2
Phelimb
closed
9 years ago
0
Modify run-calls to delete working files at the end
#1
iqbal-lab
opened
9 years ago
0