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I have been able to successfully run the chip-seq pipeline for the example json and my own histone bam files. However, while passing in a custom **tf** .bam file, I am running into errors that I am no…
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MSID: 90888
Version: 2
Preprint DOI: https://doi.org/10.1101/2023.03.06.531320
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
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With large datasets and limited disk capacity, saving intermediate fastq files as raw fastq may take up hundreds of GBs of disk space. Disk usage may be decreaused by using gzipped fastq files. The to…
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Hi @drbecavin,
I am an active contributor to the [nf-core](https://nf-co.re/) project and have been working on the [scRNA-seq](https://github.com/nf-core/scrnaseq) and [spatialtranscriptomics](htt…
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Looks like at least sgd_noiea.gaf, aspgd_noiea.gaf have- drumroll- IEAs. Downloaded today from
http://current.geneontology.org/products/annotations/index.html
tagging @pgaudet as I mentioned t…
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The creditcard.csv file mentioned in #31 is missing a field `Class` which is a boolean value that states whether the given credit card transaction is actual fraud. I'm getting the following key error…
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## Feature request
Slightly relevant to #513
### Module(s) or script(s) involved
scripts/docker/build_docker.py
inputs/values/dockers.json
### Description
Apologies if this is a somew…
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Hello, I'm trying to generate ENCODE rna-seq-peipe report by croo, bu I met some problems.
The Comwell has printed that the pipeline has been run successfully, and the metadata.json file has beed g…
yr-gh updated
2 years ago
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Good afternoon,
I am assembling fish genomes de novo using hifi data and have run into a few issues for a few of my target species (all diploid);
first, to better understand the size and heterozyg…
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Since there are first proteomics pipelines in nf-core, it would be nice to make some parts of linting and especially the templates more generic.
Some things to consider:
- We do not need the igeno…