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I plan to PR today, though it depends on final progress.
The computation speed is slow because we currently have no mulmat kernel with interleaving broadcast support yet, so tests are time consuming…
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For pathogens and host genotypes, many natural variants occur and for these, we want to capture the differences to some nominally WT variant. We need to be able to distinguish when a variant is na…
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We've had reasonably good results with [IVA], but it has a few problems:
1. Some samples are very slow, even taking multiple days. Random primers seem to be slow.
2. We find contigs with a lot of …
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#1685 Summary of the new feature/enhancement
The terminal currently provides a way for shells to specify the title:
![image](https://user-images.githubusercontent.com/172594/60805256-76556980-a1…
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Hiya,
Can Arriba be used to detect fusions in single-cell RNAseq data (e.g. Smart-seq2). I expect to see a greater number of false positives compared to bulk RNAseq, and with a lower number of read…
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While correcting some mistakes in some examples, I ran into [this one](https://github.com/HGVSnomenclature/hgvs-nomenclature/blame/3f61cfd6f2df135da4212519f546334de93d42c8/docs/recommendations/DNA/all…
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This request was created from a contribution made by Mark Godek on May 28, 2020 12:43 UTC.
Link: https://gatk.broadinstitute.org/hc/en-us/community/posts/360067471451-Funcotator-cannot-complete-funco…
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(Copied from the lastz mailing list)
we have run lastz version 1.04.15 with --queryhsplimit=keep,nowarn:200 on two softmasked mammalian genomes. The masking comes from repeatMasker. The reason for …
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## Checklist before submitting the issue:
- [x] The issue is strongly related to the MiXCR software
- [x] The issue can be reproduced with [the most recent version](https://github.com/milaborato…
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The current way the input handling works sometimes causes keycodes (KEY_FIND) or translated escape codes ([1;6H) to be pasted as usual text inside the currently active editor.
Testcase:
- TERM=vt220…