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For everyone wondering,
the las step of creating the conda environment fails, beacuse the readme contains a typo:
it should be `conda activate pore-c-snakemake ` not `conda activate pore_c_snak…
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Hello Everyone
Can somebody help me with the following error in PSV:
> File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/snakemake/__init__.py", line 59…
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Hello, thank you very much for responding. I am new to Snakemake and Slurm. I am trying to run Snakemake on Slurm. When running tasks, I receive the message "Slurm accounting storage is disabled." Fro…
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The cookiecutter template uses a log directory path that points to a directory on the author's computer:
https://github.com/Snakemake-Profiles/htcondor/blob/e9b911be339f1bd9318d7d0a9d2a6bb3d870c7f5…
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**Snakemake version**
6.7.0
**Describe the bug**
It's not possible to use a "function as an input file" with `params:` if the function takes `wildcards` as an argument and returns a dictionar…
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**Snakemake version**
8.10.0
snakemake-wrappers version : "v3.7.0/bio/multiqc"
**Describe the bug**
So, I have a bigger project, where in the end, I run multqc on reports generated by other …
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**Snakemake version**
5.32.0
**Describe the bug**
When a rule `output:` points to a file or directory on S3, the workflow throws a `MissingOutputException`. However, I can see that the directorie…
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Hi Oskar,
I tried to reinstall binny using github resource and ran ./binny -i config/config.init.yaml, but here I got this tricky report:
![image](https://github.com/a-h-b/binny/assets/88032525/cd…
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**Snakemake version**
7.12.0
**Describe the bug**
`snakemake --export-cwl workflow.cwl` fails with `FileNotFoundError`.
**Logs**
```
Traceback (most recent call last):
Fil…
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**Snakemake version**
Version 6.3.0
**Describe the bug**
When executing a Snakemake workflow using google life sciences executor, the first few jobs go through and then I get an SSL error. The …