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Latest run:
/rap/nne-790-ab/projects/Project_CQDM2/Participant3-indepth/Sample_P3J7-SilverRayFR-2013-10-02d
Reads are in :
/rap/nne-790-ab/projects/Project_CQDM2/Participant3-indepth/Sample_P3J7
R…
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I used the function -enable-neighbourhood to write Neighborhood relation between contigs but the file came out with only the header.
Path of analysis : /rap/nne-790-ab/projects/Project_CQDM2/Partic…
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Construct a method that delivers a summed matrix to the client. Think RESTful with a natural API that allows reuse. Maybe something like /pfitmap.org/protein_counts?enzyme=RNR I&taxons=Bacteria,Archae…
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All the files to reproduce the bug (submission script, configuration file, reads, assembly output, and Ray src code) are located here (via sym links) :
/rap/nne-790-ab/projects/deraspem-raytest/Ray…
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The data are : /rap/nne-790-ab/projects/Project_CQDM2/CQDM_Run1/Sample_CQDM2-3-K51-SilverRay-2013-01-22/Assembly
Example blast :
contig-21000007 contig-20000007 99.98 227992 37 1 31788…
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Path:
/rap/nne-790-ab/projects/NIH_Human_Microbiome_Project/Samples
Script:
scripts/SilverRay-Scalability-SRS011098-mini-ranks/Template.sh-1
Last completed step:
$ grep "creating seeds" SRS011098-Ra…
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Viruses are going to be a mess, but we should start digging into some test datasets (e.g. Joe DeRisi's sequence data, or genomes from easier virus groups like Mimiviruses) to see what the PhyloSift ou…
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Ray: plugin_SeedExtender/SeedExtender.cpp:2067: int SeedExtender::chooseWithSeed(): Assertion `false' failed.
Error: The seed contains a choice not supported by the graph.
Extension length: 177 vertic…
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FTP is required to retrieve information from certain biological databases, e.g. `ftp://ftp.ncbi.nlm.nih.gov/genomes/Viruses/Bundibugyo_ebolavirus_uid51245/NC_014373.faa`.