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The tool currently supports target to target replacement suggestions only. To perform source to target replacements, an alignment model is run and replacements are performed as a pre-processing step. …
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@endrebak asked for suggestions on a possible API to make this a more general purpose read-my-bam tool.
My thought is a `read_bam` function that returns a pandas.DataFrame (similar to what is alrea…
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### Describe the bug
When I group button that has label only and another button that has icon only, alignement is broken. Looks like they are not horizontally aligned.
Adding display:flex on but…
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Hello,
Thank you for providing this software! However, I encountered the following error when using phase_contacts_with_monte_carlo:
[0h 0m 0s] Loading GFA...
No index found, generating .gfai f…
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For old sorcerer (v1)
```bash
!{CCO_old}/fastscore.exe {fasta} --out-name={v1_bin_bn} --align=-7,0,7 --orientation=P
```
New version (v3 -- I don't know why I'm calling it v3, but I have this in…
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Hi Coyote Maintainers:
I am a PhD student from Northeastern University in Boston, US. I am considering using Coyote RDMA part in our project to communicate with Mellanox RDMA NIC. I am currently tr…
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We have a user request for this software on our cluster. I am following the instructions https://github.com/LLNL/COGENT/tree/master?tab=readme-ov-file#install-instructions specifically starting from t…
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I successfully built Joshua but I'm unable to train the quick start Indian model. The file build_binary is not present. I'm trying to build on ubuntu 14.04
The error message is added below.
After the …
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Is there a way to speed up the alignments using multiple cores?
Thanks!
sga91 updated
4 years ago
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Adding ska to our phylogenetics inference offerings would provide an alternative reference-free phylogenetics analysis tool in addition to kSNP3. It could also be used for creating whole genome alignm…