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Hi,
I'm not writing to report issues. This is a question-related post. I'm trying to time calibrate a phylogeny using MrBayes, it's the first time I'm doing it and I want to make sure I'm not doing…
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What is(are) the main reason(s) for JSON?
Currently I am a big fan of TOML, and it seems to be the way to pkg3: https://github.com/JuliaLang/Juleps/blob/master/Pkg3.md#configuration
Maybe its ev…
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Hello,
This may or may not be an issue but for some reason, in the Biomarker tab under `Select Target Condition` the only options that appear are `SEX` and `DISEASE`, neither of which are in my da…
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Hello IUC,
**Tl;DR:**
Help us fix tool tests!
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we would like to make sure that our tools are well tested and working in the widest range of deployment scenarios possible…
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Related to discussion in MiaBook [PR#14](https://github.com/microbiome/MiaBook/pull/14).
We have several "alpha diversity" indices and methods. Alpha diversity is a vast general category that is of…
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Hi Benjamin,
I have got different warning errors when I running the phyloseq package:
1) > day plot_richness(ps, x="Day", measures=c("Shannon", "Simpson"), color="When")
Warning message:
In est…
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Hi,
I would like to compare the clonality of TCR clonotypes defined using either the CDR3 alpha nucleotide sequence only or the CDR3 beta nucleotide sequence only. Which metric of the ones that ar…
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