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Hi @lczech ,
I ran into the below error when running an unusual dataset with EPA-NG (v0.3.4) and GAPPA (v0.1.0).
(Incidentally I just noticed that the version reported by GAPPA is still 0.0.0)
…
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In the OUTPUT, I got two files, `gtdbtk.ar122.classify.tree` and `gtdbtk.bac120.classify.tree`. However, they can't be opened by Mega and ITOL.
How to open the two files?
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Hi,
If I have a Tree() with an internal name on root node, that name is not written when using the write() method in fomat=1. Looking at the example at http://etetoolkit.org/docs/latest/tutorial/tuto…
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Are we still using @rmcclosk 's thread safe functionality?
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I'm trying to run the examples in the http://toytree.readthedocs.io/en/latest/tutorial/ but
```
import toytree
newick = "((a:1,b:1)A:2,(c:3,(d:1, e:1)B:2)C:1)root;"
tre1 = toytree.tree(newick, f…
mapio updated
6 years ago
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Hi,
I am new to Hyphy - and later need to run (either busted or relaxed) on several thousand files (thus non-interactively, command line etc which seems also to be a bit tricky and complex).
Maybe…
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I'd like to add an option to produce JSON formated output as an alternative to the standard ms style output. This would then be easy to import from almost any programming language. This could look lik…
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Currently, the description for this repository reads:
> A Python tool for constructing a newick formatted tree from a set of classifications.
I think it should read:
> A Python library for …
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Hi,
I am trying to understand how the simulation of the smc_prime model and the record_full_arg go together in the output produced. For instance, when I run a command like:
```
ts = msprime.s…
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Hi everyone,
The OrthoFinder run I was performing encountered an error at the species tree inference step.
The only logged error message was:
`ERROR: An error occurred`
`ERROR: Species tree in…