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This is another EG.5.1--Flip--307 branch so deserves attention. Especially considering JG.3 is the fastest among all designated/undesignated lineages including BA.2.86 now.
JG.3+C7932T,C25810T(Orf1…
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XBB.1.9.1+
A28704G,C1758T, C23625T, C28005T, A22995G, C28201T
ORF1a | A498V
S | K478R, A688V
ORF8 | P38S, S103L
N | D144G
usher assigns it on XBB.1.9.1+C28201T+A22995G branch, however, as bo…
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_Transferred from sars-cov-2-variants/lineage-proposals#722_
**Defining Mutations:** `XBB.2.3` > `A13187G(ORF1a:I4308V)` > `G11272T(ORF1a:M3669I), C22530T(S:T323I)`
**Query:** `G11272T, A13187G, C…
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GK.2+T4885C+T11158C+G8185A, T22031C, G28541T(S:F157L,N:A90S,Orf9b:E86D)
(GK.2=XBB.1.5+S:455F,456L,511I)
GISAID query: G8185A, T22031C, G28541T
No. of seqs: 5(USA-NY,IA,MA,RI, Israel 1 each)
…
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tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_gen…
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_Transferred from sars-cov-2-variants/lineage-proposals#524_
**Defining Mutations:** `XBB.1.16` > `C7765T` > `C7081T, T22912C, C24210T(S:T883I)`
**Query:** `C7081T, T22912C, C24210T`
**Earliest s…
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This sublineage emerged in a part of tree first spotted and proposed by @agamedilab in #1807.
in the same issue @HynnSpylor noticed a branch defined by S:T478R counting just an handful of sequences a…
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EG.5.1.1+S:G184S(G22112A)
GISAID query: G22112A,C6541T,T23018C
No. of seqs: 10( China 1 South Korea 2 France 1 Canada 1 Australia 1 UK 4)
First: EPI_ISL_17850368, China, 2023-6-5
Latest: EPI_I…
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I was just looking at how XBB* was taking some other major variant's mutations. S:157L seems quite beneficial and occupying a rising fraction of XBB*. So I looked at a large tree about it and discover…
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XBB.1.5(with 17124 but without 10204)+C27059T+C28005T(Orf8:P38S), T22928C(S:F456L),G22927T(S:L455F),C22624T,A25045G
+C15755G(Orf1b:S763C),G23093A,C23741T(S:V511I),C7417T,C25046T(S:P1162S)
Compared…