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Hi there,
Having set up `alphafold` in my machine (NVIDIA GeForce RTX 2080 GPU, ), which I've tested successfully, I'm now coming across the error below running it on a 5586 AA predicted protein (f…
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Hey Jacob,
I had a random idea about predicting satellite images... it's probably really silly!
## Background
The idea is slightly inspired by watching [Yannic Kilcher's video about Alpha Fol…
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**Are you using the latest release?**
Yes
**Describe the bug**
Genome is assembled and gets a high busco score with 5.0 comes out to ~95% with our genomes. But after annotation and running busco …
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Hi,
First of all, thank you for this user-friendly tool that you provided. I like it a lot.
Then, could you please give some more help on the tm8 files ?
You say :
"#TopoPred_TM8: 8-state tran…
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1. Build dataset
1. [x] Copy all aflow platinum conf files from #narval to #h4h ✅ 2024-04-29
2. [x] Init new platinum dataset with new confs ✅ 2024-04-29
```python
create_datasets(cfg.DATA_OPT.p…
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Hi Jason, maybe you can advise using something better than exonerate for protein2genome mapping, but... since I am using it - I've found a very strange behavior of your perl script, I can't explain.
…
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Instead of inputting a 17-bp sequence flanking an SNV, can we build another format to suit for Indels?
Can we input a table of two columns while the left column storing WT sequences and the right …
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Hi,
I am new to Eggnog-Mapper and barely have experience on using Python. Previously I attempted to install it on Windows computer but failed to run it for some problems that I had no idea how to…
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We are not rendering any glyph if the parent feature is 'gene' and its sub-feature is not equal to 'mRNA'
example gff
```
ctgA example gene 1050 9000 . + . ID=EDEN;Name=EDEN;Note=protein kinase
…
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# [Roadmap]
## 1.6.1
* [x] [**`WikiCSDataset`**](https://pytorch-geometric.readthedocs.io/en/latest/modules/datasets.html#torch_geometric.datasets.WikiCS)
* [x] **`DeepGCN`**
* [x] [`GENConv…