-
See https://github.com/samtools/htslib/issues/593#issue-259627325 for context.
-
Hi I'm trying to create the BAM file and it gives an error.
I have installed recycler using bioconda.
This is the error:
Danielas-Mac:Recycler niazevedo$ make_fasta_from_fastg.py -g assembly_gr…
-
I have a user who is attempting to convert a cram file into a bam file, but getting the error below. Do you have any suggestions?
Environment:
RHEL 7.1
openjdk 1.8.0_101
cramtools-3.0
Comm…
-
I' am trying test GFusion on a small dataset. The reference genome sequences I've downloaded is hg19 from [http://ccb.jhu.edu/software/tophat/igenomes.shtml](http://ccb.jhu.edu/software/tophat/igenome…
-
Dear Velocyto-experts,
I am trying to perform RNA velocity analysis of 10x single cell data (cite seq) and during my velocyto executions I noticed warnings that the chromosome IDs in my bam files a…
-
Hi,
I'm not getting any response on the [BioStars VG](https://www.biostars.org/p/9585526/#9585526) forum so figured i'd post here:
I'm aligning my reads to the reference graph using the same proce…
-
Hi everybody,
It seems could not run the velocyto command for some reason. When I try to run the general command for BAM file, I get the following error. It seems I could find the data for UMIs. Th…
-
"flair 123" module magic can never work correctly given the way python argument parsing works. The arguments for "flair 23" are not the same as "flair 123". This is horribly confusing and the beha…
-
## Software and OS versions
IGV version: 2.18.4 (did not work in 2.18.3 as well)
OS: Mac OS 14.7 (23H124)
Platform: 2.6 GHz 6-Core Intel Core i7
## Expected
**Copy read details** menu option co…
-
I'm trying to use bamstats04 or bamstats05.
I downloaded the jar file from [https://uncloud.univ-nantes.fr/index.php/s/4sL77oWR2BFzSBH](url)
I tried running bamstats04 but it couldn't find it `[SE…