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**Describe the bug**
merge_metaphlan_tables.py *_abundance_metagenome.txt > output/merged_abundance_table.txt
Traceback (most recent call last):
File "/home/bioinfo/sunyy/.conda/envs/mpa4/bin/mer…
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java -jar /Bioinfo/picard-2.21.4/picard.jar MarkDuplicates INPUT=Merged_BW-1.bam OUTPUT=Merged_BW-1_mdup.bam METRICS_FILE=BW-1.txt REMOVE_DUPLICATES=false
This is command i am using for marking the …
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https://mp.weixin.qq.com/s/_E4dxTZMpLNQS3KTG5I6SQ
ixxmu updated
11 months ago
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Hi,
I can read and work with a maf file but when I try to add external clinical data to it, I get this error:
```
Error in gsub(pattern = " ", replacement = "_", x = colnames(sample.anno), :
…
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## Need
Balsamic is currently built using Python version 3.7, which is reaching its end of life ([27 Jun 2023](https://endoflife.date/python)).
## Considered alternatives
The alternative inv…
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Hello,
I am new in using mixcr but I encounter a problem I can not solve
I have bulk tcrseq data paried end and I am using the following command which do not work
thanks for your help
…
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As a member of team bioinfo prod I want all the fastq files to be available for analysis for old hiseq X samples so that I don't have to rerun analysis based on missing indata
Problem:
`cg transf…
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Hi, Thanks for developing this wonderful resource.
I would like to include `datasets` in bioinfo pipelines that utilize containers (& cannot use conda) and wanted to request that this tool is added…
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Hi! Thank you for providing a very promising script for Nanopore amplicon data. However, I am running into issues when trying to run it. There seem to be some issue with the concatenateFastq process, …
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I have followed the tutorial and I try to import vcf and maf file.
The error are always the same:
Python 3.10.12
```
`1 matrices = matGen.SigProfilerMatrixGeneratorFunc("test", "GRCh37", "[/hom…