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In a workshop object, it would be good to know what curriculum was taught (e.g. DC Ecology, SWC with R) and be able to pull out that information so that we can track how often each curriculum is taugh…
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Hi,
I'm running into problems even using the example commands provided by the QuickStart.
This is the command I use
`PRSice_linux --base TOY_BASE_GWAS.assoc \
--target TOY_TARGET_DATA…
ge-li updated
5 years ago
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Hi,
I have a problem with PRSice 2.2.4 crashing when the program reaches the part "Calculate MAF and perform filtering on target SNPs". I'm getting the same problem also with the 2.2.2. version. Be…
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I am trying to use PRSice to get a PR risk scores at multiple thresholds (very similar to the question [here](https://github.com/choishingwan/PRSice/issues/53), however my ".all.best" file is not as e…
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I was excited to see hicExplorer has got a loop detection method and decided to try it. I used the deep Bonev et al mESCs Hi-C data. I have previously successfully called ~9000 loops using `cooltools …
Phlya updated
5 years ago
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Hi,
While running the steps (-s34567) on a relatively moderately sized data (60+ samples with > 1.8 M SE reads), the job keeps stalling at clustering (#3). My job is run as a multithreaded job (not M…
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1、The reference said that de novo assembled genome drafts could be used with cautions,but for the Topology parameters I don't know how to set, should I analysis replicons beforehand(In your paper all …
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I can now do basic upload, download and metadata operations. I would like to import a XML template.
Is there a sample XML template that I can play with? I tried to import the following but I got "…
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Hi, PRSice2 looks like a very useful program. But i’m not sure whether it can be used to just characterise individuals in terms of an existing polygenic risk score ? i.e. i want to characterise indivi…
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Hi Sam,
I have noticed that my pathway analysis RESULTS using the last version and p-competitive was a little weird. I have run a list of genes using only the known GWAS hits (only 6) and the softwar…