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Dear all,
I meet an error while running canvas Tumor-normal-enrichment, could you please help me ?
The CMD:
```
Canvas Tumor-normal-enrichment -b HCC2218C_S1.bam --normal-bam=HCC2218B…
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EDIT: I understand the problem now. I have some selfing in the population which will cause some level of homozygosity for the alternate allele and hence this will not work.
[Keeping this issue on fo…
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Dear Elizabeth
I noticed your latest script on AAV flipflop identification and thanks for your contribution in the AAV QC field. I tested the script with my data and I found most of my reads are iden…
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Dear developers
Do you have any suggestions how I can call SNPs and INDELs from the results of last? In mummer, they provided show-snps and some other scripts for downstream analysis. I wonder if t…
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Hi,
I tried using your tool which runs perfectly, but none of my SVs are lifted.
I'm trying to lift SVs called with NanomonSV tool from nanopore data with T2T reference genome to hg38 to annotate …
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Fristly, I am really thankful for the interesting tool, and I am very excited to try it now. In the middle of preparing the process, I found that a blacklist region file is not available for my genome…
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You hardcode the list of supported JSON schema versions to just draft 7.
Is there any reason this is an allowlist instead of a blocklist? Otherwise it should be removed to allow using newer schema …
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I'm learning the somatic mutation process,
Out of curiosity, I compared the results of muect2 and Pisces, and I found that there would be a great depth difference between them.
my cmd
```
/Data2/z…
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Hello,
I noticed Freebayes missed a call at position chr9:133738406 and from this point on it skipped also other calls, which are clearly visible from the bam file. Here what I see in the log file an…
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I'm currently struggling with failure on detecting most distal polyadenylation site even though I used `--no_redundant longest` option in `flair collapse`. While examining the code, I've found out two…