Illumina canvas issues - Githubissues

Illumina / canvas

Canvas - Copy number variant (CNV) calling from DNA sequencing data

Other

121 stars 20 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

bedGraphToBigWig sort error

#140 ChrDec opened 4 years ago
0
Amazon bucket for reference files not available

#139 jatintalwar closed 4 years ago
2
Unexpected exception "The specified vcf file () does not exist." when running Germline-WGS mode on Linux

#138 mullinyu opened 4 years ago
0
System.ComponentModel.Win32Exception (0x80004005):

#137 ssri28 opened 4 years ago
2
ERROR: An attempt was made to load two reference sequences with the same exact names (1)

#136 osowiecki opened 4 years ago
0
Canvas vcf to plink.cnv output

#135 oalavijeh closed 4 years ago
2
ERROR: Exception caught in WorkDoerFactory

#134 ssri28 opened 5 years ago
22
Canvas:REF

#133 oalavijeh closed 5 years ago
2
Commandline parsing error

#132 DaGaMs closed 5 years ago
3
Germline-WGS:ERROR: Either option sample-b-allele-vcf or option population-b-allele-vcf must be specified

#131 zhaoxia-genedock closed 5 years ago
1
Include linkes to publications in the README

#130 tfenne closed 5 years ago
1
filter13 bed file not found error

#129 asmariyaz23 closed 5 years ago
1
System.ApplicationException: ERROR: Expected to read 27029 bytes from the block header, but only read 20537 bytes.

#128 xxxue96 closed 5 years ago
1
The specified vcf file () does not exist

#127 nicokrez closed 5 years ago
6
Unable to download reference

#126 nicokrez closed 5 years ago
1
/canis_familiaris.vcf' should contain one genotypes column corresponding to sample

#125 osowiecki opened 5 years ago
3
help to interpret CN value for calls with <DUP> alternative allele

#124 jazberna1 closed 5 years ago
2
Canvas 1.40 is looking for libpng12.so.0

#123 osowiecki opened 5 years ago
0
vcf header does not include CN1

#122 jazberna1 closed 5 years ago
2
Germline-WGS fails with binned failed

#121 jazberna1 closed 5 years ago
3
Canvas cnv reference problems ?

#120 sbilobram closed 5 years ago
17
SmallPedigree-WGS System.ArgumentOutOfRangeException: Index was out of range.

#119 curtisjamison opened 5 years ago
15
Demo evaluation needs correction

#118 logust79 opened 5 years ago
5
CanvasSomaticCaller Error

#117 sichan778 opened 5 years ago
1
vcf contains >1 samples, name for a sample of interest must be provided

#116 logust79 closed 5 years ago
4
Canvas installation

#115 beginner984 closed 5 years ago
6
Using canvas for specific case

#114 beginner984 closed 5 years ago
1
calling CNV from whole exome sequencing data

#113 huynhnv2192 closed 5 years ago
2
Dear,

#112 huynhnv2192 closed 5 years ago
0
Small Pedigree Workflow canvaserror: missing libpng

#111 clairepalles closed 5 years ago
4
Inconsistent library release

#110 bioinfornatics opened 5 years ago
1
System.Collections.Generic.KeyNotFoundException: The given key '*.bam' was not present in the dictionary.

#109 huangl07 opened 5 years ago
4
Running Canvas 1.39.0.1598+master with mono

#108 cvlvxi closed 5 years ago
1
Is the SmallPedigree-WGS README.md example out of date

#107 cvlvxi opened 5 years ago
7
No output from sex chromosomes

#106 alvaralmstedt closed 5 years ago
1
Canvas for SE data?

#105 fedkon opened 6 years ago
1
bwa mem bams

#104 BurceTu opened 6 years ago
1
how to start Somatic-WGS? UpdateEnvironmentMono is where

#103 worker000000 opened 6 years ago
15
canvas weaker in somatic than cnvnator ?

#102 worker000000 opened 6 years ago
10
somatic l can be run either with or without a matched normal control sample ?

#101 worker000000 opened 6 years ago
4
Canvas Germline-WGS 1.38.0.1554+master asks for option '-p' in partition step

#100 liud2 closed 6 years ago
1
Proper installation instructions for Ubuntu x64 are here

#99 MagdalenaZZ closed 6 years ago
1
I'm running Tool: Somatic-Enrichment with error " Missing required value for option '--sample-name' ", but I add the parameter.

#98 Schaudge opened 6 years ago
1
Sequence contains no elements?

#97 alvaralmstedt closed 6 years ago
11
Using precomputed .binned files

#96 sternp opened 6 years ago
5
System.IO.FileNotFoundException: The specified vcf file () does not exist.

#95 ATpoint closed 6 years ago
3
tabix: Permission denied

#94 BenoitFiset closed 6 years ago
4
CheckPoint 3: Canvas workflow error: System.ArgumentNullException: Value cannot be null. Parameter name: fileName

#93 BenoitFiset opened 6 years ago
14
Unhandled Exception: System.IndexOutOfRangeException: Index was outside the bounds of the array.

#92 BenoitFiset closed 6 years ago
4
CanvasPedigreeCaller looking for hardcoded path to GenomeSize.xml

#91 david-a-parry opened 6 years ago
4