Illumina canvas issues - Githubissues

Illumina / canvas

Canvas - Copy number variant (CNV) calling from DNA sequencing data

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issues

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bedGraphToBigWig sort error

#140 ChrDec opened 4 years ago
0
Amazon bucket for reference files not available

#139 jatintalwar closed 4 years ago
2
Unexpected exception "The specified vcf file () does not exist." when running Germline-WGS mode on Linux

#138 mullinyu opened 4 years ago
0
System.ComponentModel.Win32Exception (0x80004005):

#137 ssri28 opened 4 years ago
2
ERROR: An attempt was made to load two reference sequences with the same exact names (1)

#136 osowiecki opened 4 years ago
0
Canvas vcf to plink.cnv output

#135 oalavijeh closed 4 years ago
2
ERROR: Exception caught in WorkDoerFactory

#134 ssri28 opened 4 years ago
22
Canvas:REF

#133 oalavijeh closed 4 years ago
2
Commandline parsing error

#132 DaGaMs closed 4 years ago
3
Germline-WGS:ERROR: Either option sample-b-allele-vcf or option population-b-allele-vcf must be specified

#131 zhaoxia-genedock closed 4 years ago
1
Include linkes to publications in the README

#130 tfenne closed 4 years ago
1
filter13 bed file not found error

#129 asmariyaz23 closed 5 years ago
1
System.ApplicationException: ERROR: Expected to read 27029 bytes from the block header, but only read 20537 bytes.

#128 xxxue96 closed 4 years ago
1
The specified vcf file () does not exist

#127 nicokrez closed 5 years ago
6
Unable to download reference

#126 nicokrez closed 5 years ago
1
/canis_familiaris.vcf' should contain one genotypes column corresponding to sample

#125 osowiecki opened 5 years ago
3
help to interpret CN value for calls with <DUP> alternative allele

#124 jazberna1 closed 5 years ago
2
Canvas 1.40 is looking for libpng12.so.0

#123 osowiecki opened 5 years ago
0
vcf header does not include CN1

#122 jazberna1 closed 5 years ago
2
Germline-WGS fails with binned failed

#121 jazberna1 closed 5 years ago
3
Canvas cnv reference problems ?

#120 sbilobram closed 5 years ago
17
SmallPedigree-WGS System.ArgumentOutOfRangeException: Index was out of range.

#119 curtisjamison opened 5 years ago
15
Demo evaluation needs correction

#118 logust79 opened 5 years ago
5
CanvasSomaticCaller Error

#117 sichan778 opened 5 years ago
1
vcf contains >1 samples, name for a sample of interest must be provided

#116 logust79 closed 5 years ago
4
Canvas installation

#115 beginner984 closed 5 years ago
6
Using canvas for specific case

#114 beginner984 closed 5 years ago
1
calling CNV from whole exome sequencing data

#113 huynhnv2192 closed 5 years ago
2
Dear,

#112 huynhnv2192 closed 5 years ago
0
Small Pedigree Workflow canvaserror: missing libpng

#111 clairepalles closed 5 years ago
4
Inconsistent library release

#110 bioinfornatics opened 5 years ago
1
System.Collections.Generic.KeyNotFoundException: The given key '*.bam' was not present in the dictionary.

#109 huangl07 opened 5 years ago
4
Running Canvas 1.39.0.1598+master with mono

#108 cvlvxi closed 5 years ago
1
Is the SmallPedigree-WGS README.md example out of date

#107 cvlvxi opened 5 years ago
7
No output from sex chromosomes

#106 alvaralmstedt closed 5 years ago
1
Canvas for SE data?

#105 fedkon opened 5 years ago
1
bwa mem bams

#104 BurceTu opened 5 years ago
1
how to start Somatic-WGS? UpdateEnvironmentMono is where

#103 worker000000 opened 5 years ago
15
canvas weaker in somatic than cnvnator ?

#102 worker000000 opened 5 years ago
10
somatic l can be run either with or without a matched normal control sample ?

#101 worker000000 opened 5 years ago
4
Canvas Germline-WGS 1.38.0.1554+master asks for option '-p' in partition step

#100 liud2 closed 5 years ago
1
Proper installation instructions for Ubuntu x64 are here

#99 MagdalenaZZ closed 5 years ago
1
I'm running Tool: Somatic-Enrichment with error " Missing required value for option '--sample-name' ", but I add the parameter.

#98 Schaudge opened 5 years ago
1
Sequence contains no elements?

#97 alvaralmstedt closed 5 years ago
11
Using precomputed .binned files

#96 sternp opened 5 years ago
5
System.IO.FileNotFoundException: The specified vcf file () does not exist.

#95 ATpoint closed 5 years ago
3
tabix: Permission denied

#94 BenoitFiset closed 5 years ago
4
CheckPoint 3: Canvas workflow error: System.ArgumentNullException: Value cannot be null. Parameter name: fileName

#93 BenoitFiset opened 5 years ago
14
Unhandled Exception: System.IndexOutOfRangeException: Index was outside the bounds of the array.

#92 BenoitFiset closed 5 years ago
4
CanvasPedigreeCaller looking for hardcoded path to GenomeSize.xml

#91 david-a-parry opened 6 years ago
4