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**# When I run T-DESEQ2 in bulk RNA sequencing analysis.**
treatment_groups=['4-3','4-4']
control_groups=['1--1','1--2']
result=dds.deg_analysis(treatment_groups,control_groups,method='DEseq2')
…
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**Link to problem area**:
https://github.com/matrix-org/matrix-spec/blob/main/data/api/client-server/content-repo.yaml#L226 and elsewhere in the same file.
**Issue**
API description files can be …
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Hi, thanks for your interesting tool!
I have been using cTWAS on a few datasets, and have got interesting results.
Overall, I have been able to run most parts of the analysis relatively smoothly.…
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Once again, it came to your attention that the CSV file format is not sufficient for a lot of use cases (XYT Plot with a lots of data).
Also, an often requested feature is to compare individual runs,…
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With a large dataset of >500 injections (Orbitrap Q-Exactive, full scan, not centroided), I encountered that the retention time adjustment did not execute. The script kept running, so that later proce…
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### Describe the bug
A Matrix field in Hyper only works when the Matrix field's view mode is set to `As inline-editable blocks`. When the view mode is set to either `As cards` or `As an element index…
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我的环境是python3.8.pytorch2.0.0,但再运行python run.py --dataset cornell --Ts 1.0 --topk 5 --lambd 0.9这行指令并没有顺利运行,出现了下面的错误,请问您有遇到吗?
Traceback (most recent call last):
File "/home/visionx/anaconda3/envs/t2g…
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Thanks for Mr. Zhang Zhi Jie‘s pithy and fine code.
Leaving batch_size=1, the training is very slow as the data increasing. I try to use bigger batch_size, but get reconstructed matrix in batch. So t…
8188 updated
3 months ago
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Noticed this when building **matrix** with `resolver: nightly-2016-08-06`:
```
Data/Matrix.hs:1330:1: warning: [-Winline-rule-shadowing]
Rule "matrix/traceOfSum" may never fire
because ‘tra…
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Dear Ning,
I recently encountered the same problem #14 . I noticed that the issue was closed, so I submitted a new issue.
I am sure that my save path does not contain Chinese characters and exis…