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Hi,
I've encountered a rather peculiar software issue involving the `phyloseq` package and the `lme4` package when analyzing longitudinal microbiome data. Below, please find a reproducible example …
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Hi,
I have been using the same script many times with the same data and never had any problems, but lately it seems like `tax_table` function is not working anymore for me.
I keep having error …
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We could add a summary function that could generate / print out basic summaries of a `TSE` object for microbiome data.
This would be roughly equivalent to [microbiome::summarize_phyloseq](https://g…
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Consider structure of OMA. How much general information there should be about microbiome data science (not directly related to miaverse)? Should we structure the book differently? Currently it seems t…
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Hello,
I was able to get LOCOM working on my 16S SSU count table and have created a "res" object based on one of my binary metadata variables:
`res
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Hello,
I am using R (version 4.2.3 (2023-03-15)) with phyloseq (1.42.0), qiime2 (0.99.6), microbiome (1.20.0).
I am trying to plot community composition only with the 10 more abundant species wit…
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### Bug summary
just a list of comments
### Bug details
General questions for study creation:
it looks like we must select an environmental template - what of studies that require more than one sa…
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**Description of the issue**
As part of the reporting for MICROBE WP3, we need to write a milestone progress report document for MS6: `Validation tools for assessing compliance with standards for mic…
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Dear all,
I have generated tables from two analysis modes (sqm_longreads and co-assembly). I have some queries regarding the KO.abund.tsv file:
Are the tables normalized?
If they are not normal…
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The adult microbiome of healthy and otitis patients: Definition of the core healthy and diseased ear microbiomes – Maria Burton et al. – PlosOne
https://journals.plos.org/plosone/article?id=10.1371/j…