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Hi there
I was running into some issues recently when I tried to assemble a small insect (250Mb) genome with Illumina (120x, PE 150bp) with ca 25x ONT 1D data. I am getting these buffer overflow is…
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# #Hi, teacher
I'm trying to call DNA modifications by using deepmod.
First I am successful to create virtual environment and install deepmod step by step through following the command lines…
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I ran scanITD and no errors were thrown, but the VCF output shows no variants (it has the headers and everything - scanITD just didn’t seem to find anything. The issue is that the sample has tons of I…
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Hi,
I am trying to run a base call job on our HPC. However, when I requested 4 gpu, the job finished in the same amount of time as when I requested 1 gpu. Could someone help me figure out what is wr…
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu
### Workflow Version
wf-human-variation v2.3.1-g6a6daa6
### Workflow Execution
Command line (Local)
### Other wor…
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See a great example here: [https://github.com/isugifNF/blast/blob/master/main.nf](https://github.com/isugifNF/blast/blob/master/main.nf).
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Hello,
In my config file I tried to set up Sample decoding according to all of the examples I have seen. When I validate the file, after the Output transform section, there should be a "Sample decodi…
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Hi,
Trying to install on a different machine (Ubuntu 20.04.1; all dependencies successfully installed through conda, inc gcc 10.3).
I get:
03)Installing gfatools.
gfatools installation failed,…
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Hi Andre and the Bambu team,
I am encountering an issue related to issue #444 . I merged read classes across 44 samples as you had suggested and found that there were about 1000 novel transcript is…
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I test the example dataset within singularity, but met some probelm until ###GMAP MAPPING STARTED AT: 13:06:26 21-03 ###
###BUILD INDEX###
bellow is Error message:
Traceback (most recent call l…