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Hi,
We are currently working on identifying gRNA sequences targeting sub-families of transposable elements. The purpose is to test "consensus" sequences that we identified to show that these sequen…
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http://repeatmasker.org/RepeatMasker/ says:
Install RepeatMasker Libraries
RepeatMasker comes with a copy of the curated portion of Dfam ( Libraries/Dfam.h5 ) and will work out-of-the box with this …
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* link to support ticket: https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=86466
* website: https://www.repeatmasker.org/
* installation docs: https://www.repeatmasker.org/Rep…
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## Describe the issue
Sometimes,running withtest_installation_modules.py will generate the following errors:
```
[23/08/2022, 02:11:15] perSVade annotate_SVs finished correctly
Running module ann…
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Hi Kevin,
Thanks for sharing such a great TE annotation tool!
I have two questions regarding the reasonTE pipeline.
1) Why reasonTE has less TEs found compared to that of RepeatMasker output?…
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Add [DCC](https://github.com/dieterich-lab/DCC)
DCC uses STAR to:
- align PE reads
- align mate1 and mate2 separately
- call circRNAs
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I installed `McClintock` and all dependencies in a conda environment (on the cloud; databricks) and tried the pipeline with the test dataset acquired from `download_test_data.py`. I got the following…
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RepeatMasker runs fine, and outputs files to a temporary folder. However, once completed, all files except the output logfiles generated as part of the bsub command, vanish.
No errors are given, a…
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I was able to find Repeatmasker files on the UCSC website but they don't seem to be in the exact same format and with the *.rm.out name. Could you provide a link?
Thanks in advance!
Josh
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Hi there,
Thanks for this nice and great tool. I used it on my several sets of data. Most of them worked smoothly, but three sets of data were stopped by some reasons.
I executed the following …