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**Hello,**
**When I'm following the tutorial of [scButterfly-B](https://scbutterfly.readthedocs.io/en/latest/Tutorial/RNA_ATAC_paired_prediction/RNA_ATAC_paired_scButterfly-B.html), while executing…
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### What kind of feature would you like to request?
Other?
### Please describe your wishes
Depends on
- https://github.com/scientific-python/pytest-doctestplus/issues/229
- https://github.com/s…
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### Question
I installed the latest version of ehrapy(MACos Ventura Version 13.6.7). When I run it I get this error:
cannot import name 'AnyRandom' from 'scanpy._utils' (/Library/Frameworks/Python.…
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Hi developer,
I installed CAME with guide and try test pipeline like this
import came
if __name__ == '__main__':
came.__test1__(6, batch_size=2048)
came.__test2__(6, batch_size=None)
…
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When plotting the latent space, for example the velocity stream embedding, with specifying `figsize` can lead to cells being cut off at the border (see picture below).
![image](https://user-ima…
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We have recently acquired some of the single-cell kits from Singleron in the USA and are now ready for the data analysis.
I have to say that I do not remember ever seeing software from a commercial…
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Hi @kaizhang -
This is mainly a request for more documentation, as I didn't see this explicitly mentioned anywhere (though perhaps I missed it) but is likely useful to others.
I've followed your v…
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In GitLab by @grst on Mar 31, 2020, 16:56
Scanpy has the dotplot with dendrogram for genes, which I find pretty cool. I would imagine it a good chance to get some overview on the whole dataset to sho…
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![image (10)](https://user-images.githubusercontent.com/25906087/72300922-09d19080-361a-11ea-8834-0cdc35b7b367.png)
The PCs are no longer in order after upgrading to v.1.4.5.post1
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Hello,
I was following one of the tutorials for running cNMF on my own data set. My dataset has 78103 observations and on NAs or inf counts. To see if I could get the pipeline going I set the pa…