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I have some cases where I need to keep seperate `Project.toml` because I'm using different versions for a package(s). I'm curious if you (@MilesCranmer ) think this is a valid approach. I tested it an…
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When I run filter_input.py, I get the the following KeyError:
Metagenome1 (error surfaced relatively quickly):
Indentifying 16S reads
Traceback (most recent call last):
File "/Users/spaver/bin/reago…
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for reference data transformations that are more complex (or if issue #6 is not solved in the near future), add functionality that a separate snakemake module is dynamically loaded (defined in contain…
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Hello,
I'm trying to run IchorCNA as a function for the first time (I used to run it as a command line).
I'm running with this sessionInfo():
```
R version 4.2.2 (2022-10-31)
Platform: x86_64-c…
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When creating a rule with a name like this:
```
rule NAME:
input:
inputFile="path/to/inputfile",
output:
outputFile="path/to/outputfile",
shell: "somecommand {i…
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hey @fbartusch, Another question for you! I've created some cloud builders that can be launched to run snakemake on Google Cloud (compute) and I tested the valgrind (memory) analysis across about 16 …
vsoch updated
6 years ago
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## The problem
I don't know what the cleanest way of implementing this in a BidsApp is, but it seems it would be useful to have a "rerun" capability a la `datalad rerun`. Given pretty much everythi…
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Hi,
I am trying to run the UltraQuant workflow on multiple nodes (in parallel mode - like MPI) of a SLURM based cluster. but unfortunately, it keeps giving me fatal I/O errors (files missing relat…
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**Snakemake version**
7.14.0
**Describe the bug**
When I stop snakemake execution via ctrl+c, the output files are not removed, but they are when the execution is stopped because of a fai…
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When I try to build the article locally following the instructions in the README I get the following output and error:
```
(syw) krosenfeld@ubuntu:~/projects/CE_accretors$ showyourwork build …