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1. When adding a new species, should we require that the original contributor also generate tables for the docs, as [done when a new demographic model is added](https://popsim-consortium.github.io/std…
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So this maybe just an FYI for these entities: PATHGO_0000103 (host toll-like receptor signaling disruption factor) AND PATHGO_0000233 (disrupts host toll-like receptor signaling). This is related to i…
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## Background
GBIF has recently begun publishing records from a metagenomics publisher MGnify.
https://www.gbif.org/publisher/ab733144-7043-4e88-bd4f-fca7bf858880
Typically these records can b…
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## Input specifications
To skip the qc and assembly step we can provide the assemblies and reads used to generate the assemblies in a CSV file together with a CSV file specifying the reads.
The asse…
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### Description of feature
I suggest to make it possible to run sintax instead of assignTaxonomy using all taxonomic databases currently supported by ampliseq. It should only be a matter of reformatt…
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All checkboxes on the web search form should be supported in the observation search grammar. Use the preposition `with` and accept any number of keywords, e.g.
`,obs any from maritimes with needsid…
synrg updated
4 years ago
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Hi,
I am trying to apply tax_glom function on my phyloseq object. But looks like it is not working.
The dimensions of the file I am working on is 768 OTU and 201 samples
The code I used:
OT…
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Hi
Firstly I have found the documentation and usage of mmseqs2 for taxonomic assignment to be extremely good and easy to follow!
However, just a quick point that some of the ncbi taxids given do…
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e.g.
```
$ java -jar embl-api-validator-1.1.146.jar test.embl
***MESSAGES SUMMARY***
Compressed messages (occurring more than 5 times)
INFO: organism classified. Recruiting translation tab…
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We have observed in several experiments that the visualisation offered by the powergraph does not reflect exactly the combinatorics of the solution. This seems to be normal as powergrasp uses some heu…