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I am running Qorts on BAM files generated by STAR. It seems that Qorts is unable to locate the chromosome identified in my GTF, yet this is clearly the first chromosome listed in my genome FASTA... a…
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Hi,
I have this error that seemed to be coming from freebayes, I have googled but still have no idea of how to solve it.
### freebayes-parallel reference/ref.txt 8 -p 2 -P 0 -C 2 -F 0.05 --min-c…
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right now the biggest bottleneck in charcoal is `compare_taxonomy`, which does the summarization. It iterates over all of the input genomes and computes summary statistics for each one, and then outpu…
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Created a clean Project, study and link file , transform, load went fine, annotations failed. This was working fine before applying the stats fix changes.
2019-02-22 11:44:09 [main] INFO VariantH…
wbari updated
5 years ago
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Hi @emi80
I ran grape-nf with the following command inside a conda environment (However not all the tools were installed through conda):
nextflow -c /home/abdosa/.nextflow/assets/guigolab/gra…
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Dear Prof. Wang,
I'm sorry for interrupting you.
I am using ANNOVAR to annotate my vcf file. When I used convert2annovar.pl to convert vcf file into an avinput file, I found a problem. All my vari…
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Hi,
I used genomescope from this repo:
https://github.com/schatzlab/genomescope
and
https://github.com/tbenavi1/genomescope2.0
And got weird results:
From v1:
https://ibb.co/FXPYPgV
…
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https://doi.org/10.1101/433763
> Recent advances in deep learning, particularly unsupervised approaches, have shown promise for furthering our biological knowledge through their application to gen…
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thanks for your development of such a great tool. AND I`m working with Macaca, but there is no available reference genome. IF you need any file to creat new reference please tell me!
SO could you ple…
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- [ ] Acer yangbiense - This organism has no downloads
- [x] Actinidia chinensis
- [x] Betula pendula
- [x] Carica papaya - No genome or gff file
- [x] Cinnamomum micranthum
- [x] Corylus avella…